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Dataset ID

NHA000162

Type of data
GWAS for 215 phenotypes
Access criteria
Unrestricted-access
Total data volume
567 GB
File formats
  • HTML
  • ZIP
Research
hum0197
Date published
2021-03-22
Date modified
2021-03-22
Secondary ID
hum0197.v3.gwas.v1

Unrestricted-access files linked to this dataset

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201–300 / 601

FileLabelSizeCopy URL
hum0197.v3.BBJ.T2D.v1.zipDisease name: Type 2 diabetes / Abbreviation: T2D / ICD10: E111.6 GB
hum0197.v3.BBJ.TBil.v1.zipCategory: Liver-related / Trait name: Total Bilirubin / Abbreviation: TBil592 MB
hum0197.v3.BBJ.TC.v1.zipCategory: Metabolic / Trait name: Total cholesterol / Abbreviation: TC591 MB
hum0197.v3.BBJ.TG.v1.zipCategory: Metabolic / Trait name: Triglycerides / Abbreviation: TG591 MB
hum0197.v3.BBJ.TP.v1.zipCategory: Protein / Trait name: Total protein / Abbreviation: TP591 MB
hum0197.v3.BBJ.TS.v1.zipDisease name: Toxic epidermal necrolysis/Stevens-Johnson syndrome / Abbreviation: TEN_SJS / ICD10: L51.1/L51.21.5 GB
hum0197.v3.BBJ.Tat.v1.zipDisease name: Tattoo / Abbreviation: Tattoo / ICD10: L81.81.6 GB
hum0197.v3.BBJ.ThC.v1.zipDisease name: Thyroid cancer / Abbreviation: ThC / ICD10: C731.6 GB
hum0197.v3.BBJ.Ton.v1.zipDisease name: Tonsillitis / Abbreviation: Tonsillitis / ICD10: J031.6 GB
hum0197.v3.BBJ.Typ.v1.zipDisease name: Typhoid fever / Abbreviation: Typhoid / ICD10: A01.01.6 GB
hum0197.v3.BBJ.UA.v1.zipCategory: Kidney-related / Trait name: Uric acids / Abbreviation: UA592 MB
hum0197.v3.BBJ.UAP.v1.zipDisease name: Unstable angina pectoris / Abbreviation: UAP / ICD10: I20.01.6 GB
hum0197.v3.BBJ.UC.v1.zipDisease name: Ulcerative colitis / Abbreviation: UC / ICD10: K511.5 GB
hum0197.v3.BBJ.UF.v1.zipDisease name: Uterine fibroid / Abbreviation: UF / ICD10: D251.6 GB
hum0197.v3.BBJ.UP.v1.zipDisease name: Uterine prolapse / Abbreviation: Uterine_prolapse / ICD10: N81.2/N81.3/N81.41.5 GB
hum0197.v3.BBJ.Uro.v1.zipDisease name: Urolithiasis / Abbreviation: Urolithiasis / ICD10: N20.0/N20.21.6 GB
hum0197.v3.BBJ.Urt.v1.zipDisease name: Urticaria / Abbreviation: Urticaria / ICD10: L501.6 GB
hum0197.v3.BBJ.Uve.v1.zipDisease name: Uveitis / Abbreviation: Uveitis / ICD10: H201.5 GB
hum0197.v3.BBJ.VA.v1.zipDisease name: Ventricular arrhythmia / Abbreviation: Ventricular_Arrhythmia / ICD10: I47.2/I49.0/I49.31.6 GB
hum0197.v3.BBJ.Var.v1.zipDisease name: Varicose / Abbreviation: Varicose / ICD10: I831.6 GB
hum0197.v3.BBJ.WBC.v1.zipCategory: Blood cell / Trait name: White blood cell / Abbreviation: WBC592 MB
hum0197.v3.BBJ.Zos.v1.zipDisease name: Zoster infection / Abbreviation: Zoster / ICD10: B021.6 GB
hum0197.v3.BBJ.sCr.v1.zipCategory: Kidney-related / Trait name: Serum creatinine / Abbreviation: sCr592 MB
hum0197.v3.EUR.AA.v1.zipDisease name: Aortic aneurysm / Abbreviation: Aortic aneurysm / ICD10: I71.1/I71.2/I71.3/I71.4/I71.5/ I71.6/I71.8/I71.9523 MB
hum0197.v3.EUR.AC.v1.zipDisease name: Allergic conjunctivitis / Abbreviation: Allergic_Conjunctivitis / ICD10: H10.1530 MB
hum0197.v3.EUR.AD.v1.zipDisease name: Atopic dermatitis / Abbreviation: AD / ICD10: L20519 MB
hum0197.v3.EUR.AF.v1.zipDisease name: Atrial flutter/fibrillation / Abbreviation: Atrial_Flutter / ICD10: I48514 MB
hum0197.v3.EUR.AG.v1.zipDisease name: Acute glomerulonephritis / Abbreviation: Acute_Glomerulonephritis / ICD10: N00531 MB
hum0197.v3.EUR.AIH.v1.zipDisease name: Autoimmune hepatitis / Abbreviation: AIH / ICD10: K75.4528 MB
hum0197.v3.EUR.AP.v1.zipDisease name: Acute pancreatitis / Abbreviation: Acute_Pancreatitis / ICD10: K85522 MB
hum0197.v3.EUR.AR.v1.zipDisease name: Allergic rhinitis / Abbreviation: Allergic_Rhinitis / ICD10: J30520 MB
hum0197.v3.EUR.ARF.v1.zipDisease name: Acute renal failure / Abbreviation: Acute_Renal_Failure / ICD10: N17521 MB
hum0197.v3.EUR.ATR.v1.zipDisease name: Achilles tendon rupture / Abbreviation: Achilles_tendon_rupture / ICD10: S86.01.6 GB
hum0197.v3.EUR.Abo.v1.zipDisease name: Abortion / Abbreviation: Abortion / ICD10: O03518 MB
hum0197.v3.EUR.Ang.v1.zipDisease name: Angina pectoris / Abbreviation: Angina / ICD10: I20514 MB
hum0197.v3.EUR.ApA.v1.zipDisease name: Aplastic anemia / Abbreviation: Aplastic_Anemia / ICD10: D60519 MB
hum0197.v3.EUR.As.v1.zipDisease name: Asthma / Abbreviation: Asthma / ICD10: J45512 MB
hum0197.v3.EUR.BC.v1.zipDisease name: Breast cancer / Abbreviation: BrC / ICD10: C50516 MB
hum0197.v3.EUR.BD.v1.zipDisease name: Behçet's disease / Abbreviation: Behcet_disease / ICD10: M35.21.5 GB
hum0197.v3.EUR.BP.v1.zipDisease name: Back pain / Abbreviation: Back_pain / ICD10: M54.5514 MB
hum0197.v3.EUR.BT.v1.zipDisease name: Brain tumor / Abbreviation: BT / ICD10: C71530 MB
hum0197.v3.EUR.Br.v1.zipDisease name: Bronchitis / Abbreviation: Bronchitis / ICD10: J20518 MB
hum0197.v3.EUR.Bro.v1.zipDisease name: Bronchiectasis / Abbreviation: Bronchiectasis / ICD10: J47525 MB
hum0197.v3.EUR.BtC.v1.zipDisease name: Cancer of hepatic bile ducts / Abbreviation: BtC / ICD10: C22.1/C23530 MB
hum0197.v3.EUR.CA_Un.v1.zipDisease name: Unruptured cerebral aneurysm / Abbreviation: CeAn_Unruptured / ICD10: I67.1527 MB
hum0197.v3.EUR.CB.v1.zipDisease name: Chronic bronchitis / Abbreviation: Chronic_bronchitis / ICD10: J41522 MB
hum0197.v3.EUR.CC.v1.zipDisease name: Colorectal cancer / Abbreviation: CRC / ICD10: C18522 MB
hum0197.v3.EUR.CD.v1.zipDisease name: Contact dermatitis / Abbreviation: Contact_dermatitis / ICD10: L23522 MB
hum0197.v3.EUR.CF.v1.zipDisease name: Compression fracture / Abbreviation: Compression_Fracture / ICD10: S32.01.6 GB
hum0197.v3.EUR.CG.v1.zipDisease name: Chronic gastritis / Abbreviation: Chronic_gastritis / ICD10: K29.4519 MB
hum0197.v3.EUR.CHB.v1.zipDisease name: Chronic hepatitis B / Abbreviation: CHB / ICD10: B18.0/B18.11.5 GB
hum0197.v3.EUR.CHC.v1.zipDisease name: Chronic hepatitis C / Abbreviation: CHC / ICD10: B18.21.5 GB
hum0197.v3.EUR.CHF.v1.zipDisease name: Chronic heart failure / Abbreviation: CHF / ICD10: I50.0516 MB
hum0197.v3.EUR.CL.v1.zipDisease name: Cholelithiasis / Abbreviation: Cholelithiasis / ICD10: K80514 MB
hum0197.v3.EUR.COPD.v1.zipDisease name: Chronic obstructive pulmonary disease / Abbreviation: COPD / ICD10: J44517 MB
hum0197.v3.EUR.CP.v1.zipDisease name: Colon polyp / Abbreviation: Colon_polyp / ICD10: K63.51.6 GB
hum0197.v3.EUR.CRF.v1.zipDisease name: Chronic renal failure / Abbreviation: Chronic_Renal_Failure / ICD10: N18519 MB
hum0197.v3.EUR.CS.v1.zipDisease name: Cesarian section / Abbreviation: C_sec / ICD10: O82519 MB
hum0197.v3.EUR.CSOM.v1.zipDisease name: Chronic suppurative otitis media / Abbreviation: CSOM / ICD10: H66.1/H66.2528 MB
hum0197.v3.EUR.CTS.v1.zipDisease name: Carpal tunnel syndrome / Abbreviation: Carpal_Tunnel_Syndrome / ICD10: G56.0515 MB
hum0197.v3.EUR.CVD.v1.zipDisease name: Cardiac valvular disease / Abbreviation: Cardiac_Valvular_Disease / ICD10: I34/I35513 MB
hum0197.v3.EUR.Car.v1.zipDisease name: Cardiomegaly / Abbreviation: Cardiomegaly / ICD10: I51.71.6 GB
hum0197.v3.EUR.Cat.v1.zipDisease name: Cataract / Abbreviation: Cataract / ICD10: H25/H26513 MB
hum0197.v3.EUR.CeAn.v1.zipDisease name: Cerebral aneurysm / Abbreviation: CeAn / ICD10: I67.1527 MB
hum0197.v3.EUR.CeC.v1.zipDisease name: Cervical cancer / Abbreviation: CeC / ICD10: C53529 MB
hum0197.v3.EUR.ChG.v1.zipDisease name: Chronic glomerulonephritis / Abbreviation: Chronic_Glomerulonephritis / ICD10: N03528 MB
hum0197.v3.EUR.ChP.v1.zipDisease name: Chronic pancreatitis / Abbreviation: Chronic_Pancreatitis / ICD10: K86525 MB
hum0197.v3.EUR.ChS.v1.zipDisease name: Chronic sinusitis / Abbreviation: Chronic_Sinusitis / ICD10: J32518 MB
hum0197.v3.EUR.Cho.v1.zipDisease name: Cholecystitis / Abbreviation: Cholecystitis / ICD10: K80.0/K80.1/K80.4/K81520 MB
hum0197.v3.EUR.Cir.v1.zipDisease name: Cirrhosis / Abbreviation: Cirrhosis / ICD10: K74.61.5 GB
hum0197.v3.EUR.Co.v1.zipDisease name: Constipation / Abbreviation: Constipation / ICD10: K59.0516 MB
hum0197.v3.EUR.Cys.v1.zipDisease name: Cystitis / Abbreviation: Cystitis / ICD10: N30.0517 MB
hum0197.v3.EUR.DC.v1.zipDisease name: Dilated cardiomyopathy / Abbreviation: Dilated_Cardiomyopathy / ICD10: I42.01.6 GB
hum0197.v3.EUR.DN.v1.zipDisease name: Diabetic nephropathy / Abbreviation: DM_Nephropathy / ICD10: E11.2526 MB
hum0197.v3.EUR.Dep.v1.zipDisease name: Depression / Abbreviation: Depression / ICD10: F33514 MB
hum0197.v3.EUR.Dip.v1.zipDisease name: Diphtheria infection / Abbreviation: Diphtheria / ICD10: A361.6 GB
hum0197.v3.EUR.Dys.v1.zipDisease name: Dysentery / Abbreviation: Dysentery / ICD10: A03.91.6 GB
hum0197.v3.EUR.EC.v1.zipDisease name: Esophageal cancer / Abbreviation: EsC / ICD10: C15530 MB
hum0197.v3.EUR.EM.v1.zipDisease name: Endometriosis / Abbreviation: Endometriosis / ICD10: N80521 MB
hum0197.v3.EUR.EV.v1.zipDisease name: Esophageal varix / Abbreviation: Esophageal_varix / ICD10: I85527 MB
hum0197.v3.EUR.EcP.v1.zipDisease name: Ectopic pregnancy / Abbreviation: Ect_preg / ICD10: O00523 MB
hum0197.v3.EUR.EnC.v1.zipDisease name: Endometrial cancer / Abbreviation: EnC / ICD10: C54525 MB
hum0197.v3.EUR.Ep.v1.zipDisease name: Epilepsy / Abbreviation: Epilepsy / ICD10: G40/G41519 MB
hum0197.v3.EUR.FA.v1.zipDisease name: Food allergy / Abbreviation: Food_Allergy / ICD10: Z91.011.6 GB
hum0197.v3.EUR.FNP.v1.zipDisease name: Facial nerve palsy (Bell's palsy) / Abbreviation: FacialN_palsy / ICD10: G51.0525 MB
hum0197.v3.EUR.FS.v1.zipDisease name: Febrile seizure / Abbreviation: Febrile_Seizure / ICD10: R56.01.6 GB
hum0197.v3.EUR.GBP.v1.zipDisease name: Gall bladder polyp / Abbreviation: GB_polyp / ICD10: K82.81.6 GB
hum0197.v3.EUR.GC.v1.zipDisease name: Gastric cancer / Abbreviation: GaC / ICD10: C16529 MB
hum0197.v3.EUR.GD.v1.zipDisease name: Graves' disease / Abbreviation: GD / ICD10: E05.0524 MB
hum0197.v3.EUR.GERD.v1.zipDisease name: Gastroesophageal reflux disease / Abbreviation: GERD / ICD10: K21513 MB
hum0197.v3.EUR.GP.v1.zipDisease name: Gastric polyp / Abbreviation: Gastric_polyp / ICD10: K31.71.6 GB
hum0197.v3.EUR.GU.v1.zipDisease name: Gastric ulcer / Abbreviation: Gastric_Ulcer / ICD10: K25520 MB
hum0197.v3.EUR.Gla.v1.zipDisease name: Glaucoma / Abbreviation: Glaucoma / ICD10: H40517 MB
hum0197.v3.EUR.Goi.v1.zipDisease name: Goiter / Abbreviation: Goiter / ICD10: E04522 MB
hum0197.v3.EUR.HAV.v1.zipDisease name: Acute hepatitis by Hepatitis A virus / Abbreviation: HAV_hepatitis / ICD10: B15.91.5 GB
hum0197.v3.EUR.HC.v1.zipDisease name: Hypertrophic cardiomyopathy / Abbreviation: Hypertrophic_Cardiomyopathy / ICD10: I42.1/I42.2529 MB
hum0197.v3.EUR.HD.v1.zipDisease name: Hashimoto's disease / Abbreviation: Hashimoto_Disease / ICD10: E06.3515 MB
hum0197.v3.EUR.HI.v1.zipDisease name: Head injury / Abbreviation: Head_Injury / ICD10: S091.6 GB
hum0197.v3.EUR.HL.v1.zipDisease name: Hearing loss, difficulty in hearing / Abbreviation: Hearing_Loss / ICD10: H90515 MB
hum0197.v3.EUR.Her.v1.zipDisease name: Herpes infection / Abbreviation: Herpes / ICD10: B001.5 GB

201–300 / 601

Analysis method

genome wide SNPs

Materials and participants
Biobank Japan (n = 179,000), UK biobank (n = 361,000), FinnGen (n = 136,000), no. Phenotypes: 220
  • Health status
    Mixed
  • Subject count
    676,000 (Individual)
  • Cohort
    BioBank Japan, FinnGen, UK Biobank
  • Population
    British, Finnish, Japanese
Sample description
DNAs extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
FinnGen1 ThermoFisher Array
HumanExome BeadChip Kit
HumanOmniExpress BeadChip Kit
HumanOmniExpressExome BeadChip Kit
UK BiLEVE Axiom Array
UK Biobank Axiom Array
Platform
Applied Biosystems UK BiLEVE Axiom Array
Applied Biosystems UK Biobank Axiom Array
Illumina HumanExome
Illumina HumanOmniExpress
Illumina HumanOmniExpressExome
Thermo Fisher Scientific FinnGen1 ThermoFisher Array
QC and filtering
BBJ: We included imputed variants with Rsq > 0.7.
UK Biobank: We excluded the variants with (i) INFO score ≤ 0.8, (ii) MAF ≤ 0.0001 (except for missense and protein-truncating variants annotated by VEP, which were excluded if MAF ≤ 1 × 10-6), and (iii) PHWE ≤ 1 × 10-10.
FinnGen: We excluded variants with an imputation INFO score < 0.8 or MAF < 0.0001.
Imputation
BBJ: Eagle, Minimac3
UK Biobank: IMPUTE4
FinnGen: beagle4.1
Analysis method
For binary traits, SAIGE software was used with age, age2, sex, age×sex, age2×sex, and top 20 principal components as covariates. For quantitative traits (biomarkers), BOLT-LMM or plink software was used with the same covariates.
Variant count
BBJ: 13,530,797 variants
UK Biobank: 13,791,467 variants
FinnGen: 16,859,359 variants
Phenotype data
Included
Data use policy
NBDC data sharing policy (JGAP000001)