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Dataset ID

NHA000103

Type of data
GWAS for 40 diseases
Access criteria
Unrestricted-access
Total data volume
2.2 GB
File formats
  • TXT
  • XLSX
  • ZIP
Research
hum0014
Date published
2019-10-08
Date modified
2019-10-08
Secondary ID
hum0014.v17.EC.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0014.v17.EC.v1.zipEsophageal cancer2.2 GB
hum0014_v17_README.txt2.1 KB
hum0014_v17_sample_size.xlsx12.4 KB
hum0014_v17_v18_v21_README.txtDictionary file2.2 KB
hum0014_v17_v18_v21_sample_size.xlsxSample size file13.0 KB

Analysis method

Genotyping by array (GWAS)

Materials and participants
42 disease (ICD10 code)
Arrhythmia (I499), Bronchial asthma (J459), Atopic dermatitis (L209),
Gallbladder/Cholangiocarcinoma (C23, C240), Cataract (H269),
Cerebral aneurysm (I671), Cervical cancer (C539),
Chronic hepatitis B (B181), Chronic hepatitis C (B182),
Chronic obstructive pulmonary disease (J449), Liver cirrhosis (K746),
Colorectal cancer (C189, C20), Heart failure (I509, I500),
Drug eruption (L270), Uterine cancer (C549), Endometriosis (N809),
Epilepsy (G409), Esophageal cancer (C159), Gastric cancer (C169),
Glaucoma (H409), Graves' disease (E050), Hematopoietic tumor (C81-96),
Liver cancer (C220), Interstitial lung disease/Pulmonary fibrosis (J849, J841),
Cerebral infarction (I639), Keloid (L910), Lung cancer (C349),
Nephrotic syndrome (N049), Osteoporosis (M8199), Ovarian cancer (C56),
Pancreas cancer (C259), Periodontitis (K054),
Peripheral artery disease (I709), Hay fever (J301), Prostate cancer (C61),
Pulmonary tuberculosis (A169), Rheumatoid arthritis (M0690),
Diabetes mellitus (E14), Urolithiasis (N209), Uterine fibroids (D259), Breast cancer (C509)
Coronary artery disease (I200, I209, I219)
  • Health status
    Affected
Disease
Esophageal cancer (C159)
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
HumanExome BeadChip Kit
HumanOmniExpress BeadChip Kit
HumanOmniExpressExome BeadChip Kit
Platform
Illumina HumanExome
Illumina HumanOmniExpress
Illumina HumanOmniExpressExome
Reference genome
GRCh37
QC and filtering
QC after imputation:
Exclusion criteria: Variants with imputation quality of Rsq < 0.7
Imputation
Minimac3 [imputation (1000 genomes Phase 3 v5)]
Analysis method
GenCall software (GenomeStudio)
Variant count
Autosomes: 8,712,794 variants
X chromosome: 207,198 variants
Processed data type
Imputed genotype data
Phenotype data
Included
Data use policy
NBDC data sharing policy (JGAP000001)