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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
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Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

NHA000019

Type of data
Genotype frequencies in each disease
(JSNP data)
Access criteria
Unrestricted-access
Total data volume
11.9 MB
File formats
  • XLSX
  • ZIP
Research
hum0014
Date published
2015-12-28
Date modified
2015-12-28
Secondary ID
hum0014.v2.jsnp.ci.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0014.v2.jsnp.ci.v1.zipBrain infarction11.9 MB
hum0014_jsnp_35diseases_header_definition.xlsxDictionary file10.8 KB

Analysis method

Genotyping by array

Materials and participants
Cancer (Lung cancer, Breast cancer, Gastric cancer, Colorectal cancer, Prostate cancer)
Cardiovascular diseases (Heart failure, Myocardial infarction, Unstable angina, Stable angina, Cardiac arrhythmias, Arteriosclerosis obliterans)
Cerebrovascular disorders (Brain infarction, Intracranial aneurysm)
Respiratory tract diseases (Interstitial pneumonitis & pulmonary fibrosis, Pulmonary emphysema, Bronchial asthma)
Chronic liver diseases (Chronic hepatitis C, Liver cirrhosis)
Eye diseases (Cataract, Glaucoma)
Others (Epilepsy, Periodontal disease, Urolithiasis, Nephrotic syndrome, Uterine myoma, Endometriosis,
Osteoporosis, Rheumatoid arthritis, Amyotrophic lateral sclerosis, Hay fever, Atopic dermatitis,
Drug eruptions , Hyperlipidemias, Diabetes mellitus, Basedow disease)

about 190 patients in each disease set
  • Health status
    Affected
  • Counted as
    Individual
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
N/A
Platform
Perlegen Sciences high-density oligonucleotide arrays
QC and filtering
N/A
Analysis method
N/A
Variant count
200,000 SNPs (Approx. b129)
Phenotype data
Included
Data use policy
NBDC data sharing policy (JGAP000001)