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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000889

Type of data
Processed data of JGAD000234 by JGA (mitochondrial variant calls)
Access criteria
Controlled-access (Type I)
Total data volume
1.1 MB
File formats
  • VCF
  • IDX
Research
hum0161
Date published
2024-10-17
Date modified
2024-10-17
DDBJ Search
JGAD000889 (opens in a new tab)
JGA Study
JGAS000156 (opens in a new tab)

Analysis method

WGS

Materials and participants
hepatoblastoma (ICD10: C22.2): 33 cases
cancer tissues: 33 samples
paired non-cancer tissues: 33 samples
  • Health status
    Affected
  • Subject count
    33 (Individual)
Disease
  • hepatoblastoma
Sample description
DNAs extracted from cancer tissues and paired non-cancer tissues from hepatoblastoma patients
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
WGS
Target
N/A
Reagent kit
TruSeq Nano DNA Library Prep Kit
Fragmentation
Ultrasonic fragmentation (Covaris)
Platform
Illumina HiSeq 2500
Read type
Paired-end
Read length
126 bp
Processed data type
Variant calls
Data use policy
NBDC data sharing policy (JGAP000001)