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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000720

Type of data
target sequencing of 27 cancer-predisposing genes in 10,366 gastric cancer patients
Access criteria
Controlled-access (Type I)
Total data volume
804 GB
File formats
  • FASTQ
Research
hum0014
Date published
2023-05-01
Date modified
2023-05-01
DDBJ Search
JGAD000720 (opens in a new tab)
JGA Study
JGAS000592 (opens in a new tab)

Analysis method

Targeted DNA sequencing

Materials and participants
10,366 gastric cancer patients (ICD10: C16)
23,705 + 5,996 + 37,592 controls
  • Health status
    Mixed
  • Subject count
    10,366 (Individual)
Disease
  • gastric cancer patients
Sample description
DNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Targeted DNA sequencing
Target
27 cancer-predisposing genes (APC, ATM, BARD1, BMPR1A, BRCA1, BRCA2, BRIP1, CDK4, CDKN2A, CDH1, CHEK2, EPCAM, HOXB13, NBN, NF1, MLH1, MSH2, MSH6, MUTYH, PALB2, PMS2, PTEN, RAD51C, RAD51D, SMAD4, STK11, TP53)
Reagent kit
KAPA HiFi DNA Polymerase
2X Platinum Multiplex PCR Master Mix
Fragmentation
N/A
Platform
Illumina HiSeq 2500
Read type
Paired-end
Read length
150 bp
Data use policy
NBDC data sharing policy (JGAP000001)