Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000699

Type of data: NGS (Target Capture)
Access criteria: Controlled-access (Type I)
Total data volume: 89.8 GB
File formats: FASTQ
Research: hum0287
Date published: 2023-03-30
Date modified: 2023-03-30
DDBJ Search: JGAD000699 (opens in a new tab)
JGA Study: JGAS000573 (opens in a new tab)

Analysis method

WGS

Materials and participants: Human iPS cell line: 1 line
AGVT cell line (AG: TFAP2C-EGFP; VT: hVASA-tdTomato knock-ins)1, 2; Subject count
1 (Sample)
Sample description: gDNAs extracted from iPS cells; Tumor / normal
Normal
Cell line: AGVT knock-in iPSC
Sample provider: N/A
Experimental method: WGS
Target: N/A
Reagent kit: Ligation Sequencing Kit (SQK-LSK110)
Ultra-Long DNA Sequencing Kit (SQK-ULK001)
Fragmentation: transposase chemistry
Platform: Oxford Nanopore Technologies PromethION
Read type: Single-end
Read length: 6.7 kbp (N50 = run1)
110 kbp (run2)
Data use policy: NBDC data sharing policy (JGAP000001)