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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000607

Type of data
NGS (Target Capture)
69 genes・63 genes
Access criteria
Controlled-access (Type I)
Total data volume
1.1 TB
File formats
  • FASTQ
Research
hum0005
Date published
2022-01-19
Date modified
2022-01-19
DDBJ Search
JGAD000607 (opens in a new tab)
JGA Study
JGAS000490 (opens in a new tab)

Analysis method

Targeted DNA sequencing

Materials and participants
1410 non-syndromic hearing loss patients (ICD10: H90)
  • Health status
    Affected
  • Subject count
    1410 (Individual)
Disease
non-syndromic hearing loss patients (H90)
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Targeted DNA sequencing
Target
69 genes
(ACTG1, CCDC50, CDH23, CEACAM16, CLDN14, COCH,
COL11A2, CRYM, DFNA5, DFNB59, DIAPH1, ESPN, ESRRB,
EYA4, GIPC3, GJB2, GJB3, GJB6, GPSM2, GRHL2, GRXCR1,
HGF, ILDR1, KCNQ4, LHFPL5, LOXHD1, LRTOMT, MARVELD2,
MIRN96, MSRB3, MYH14, MYH9, MYO15A, MYO1A, MYO3A,
MYO6, MYO7A, OTOA, OTOF, PCDH15, POU3F4, POU4F3,
PRPS1, PTPRQ, RDX, SERPINB6, SLC17A8, SLC26A4,
SLC26A5, SMAC, SMPX, STRC, TECTA, TJP2, TMC1, TMIE,
TMPRSS3, TPRN, TRIOBP, USH1C, USH2A, WFS1, WHRN)
Reagent kit
Ion AmpliSeq Custom Panel
Ion AmpliSeq Library Kit 2.0
Fragmentation
N/A
Platform
Thermo Fisher Scientific Ion PGM
Thermo Fisher Scientific Ion Proton
Read type
Single-end
Read length
200 bp
Data use policy
NBDC data sharing policy (JGAP000001)

Targeted DNA sequencing

Materials and participants
1559 non-syndromic hearing loss patients (ICD10: H90)
  • Health status
    Affected
  • Subject count
    1559 (Individual)
Disease
non-syndromic hearing loss patients (H90)
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Targeted DNA sequencing
Target
63 genes
(ACTG1, CCDC50, CDH23, CEACAM16, CLDN14, COCH,
COL11A2, CRYM, DFNA5, DFNB59, DIAPH1, ESPN, ESRRB,
EYA4, GIPC3, GJB2, GJB3, GJB6, GPSM2, GRHL2, GRXCR1,
HGF, ILDR1, KCNQ4, LHFPL5, LOXHD1, LRTOMT,
MARVELD2, MIRN96, MSRB3, MYH14, MYH9, MYO15A,
MYO1A, MYO3A, MYO6, MYO7A, OTOA, OTOF, PCDH15,
POU3F4, POU4F3, PRPS1, PTPRQ, RDX, SERPINB6,
SLC17A8, SLC26A4, SLC26A5, SMAC, SMPX, STRC,
TECTA, TJP2, TMC1, TMIE, TMPRSS3, TPRN, TRIOBP,
USH1C, USH2A, WFS1, WHRN)
Reagent kit
Ion AmpliSeq Custom Panel
Ion AmpliSeq Library Kit 2.0
Fragmentation
N/A
Platform
Thermo Fisher Scientific Ion PGM
Thermo Fisher Scientific Ion Proton
Thermo Fisher Scientific Ion S5
Read type
Single-end
Read length
200 bp
Data use policy
NBDC data sharing policy (JGAP000001)