Dataset ID

JGAD000460

Name: JGAD000460: target sequencing of 27 cancer-predisposing genes in 1,982 lymphoma patients
Published: 2023-05-01

Type of data: target sequencing of 27 cancer-predisposing genes in 1,982 lymphoma patients
Access criteria: Controlled-access (Type I)
Total data volume: 135 GB
File formats: FASTQ
Research: hum0014
Date published: 2023-05-01
Date modified: 2024-07-09
DDBJ Search: JGAD000460 (opens in a new tab)
JGA Study: JGAS000347 (opens in a new tab)

Analysis method

Materials and participants: 1,982 lymphoma patients (ICD10: C81, C82, C83, C84, C85, C86, C88, C91)
23,705 + 5,996 + 37,592 controls; Health status
Mixed
Subject count
1982 (Individual)
Disease: lymphoma patients
Sample description: DNA extracted from peripheral blood cells; Tissue
Peripheral blood
Tumor / normal
Normal
Sample provider: N/A
Experimental method: Targeted DNA sequencing
Target: 27 cancer-predisposing genes (APC, ATM, BARD1, BMPR1A, BRCA1, BRCA2, BRIP1, CDK4, CDKN2A, CDH1, CHEK2, EPCAM, HOXB13, NBN, NF1, MLH1, MSH2, MSH6, MUTYH, PALB2, PMS2, PTEN, RAD51C, RAD51D, SMAD4, STK11, TP53)
Reagent kit: KAPA HiFi DNA Polymerase
2X Platinum Multiplex PCR Master Mix
Fragmentation: N/A
Platform: Illumina HiSeq 2500
Read type: Paired-end
Read length: 150 bp
Data use policy: NBDC data sharing policy (JGAP000001)