Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000396

Type of data: NGS (Visium Spatial Gene Expression), Histological image
Access criteria: Controlled-access (Type I)
Total data volume: 595 GB
File formats: FASTQ
TSV
CSV
JSON
PNG
TIFF
Research: hum0200
Date published: 2022-03-10
Date modified: 2022-03-10
DDBJ Search: JGAD000396 (opens in a new tab)
JGA Study: JGAS000290 (opens in a new tab)

Analysis method

Visium 空間トランスクリプトーム + 病理画像

Materials and participants: IDC (ICD10: C509): 2 cases
DCIS (ICD10: D051): 1 case; Health status
Affected
Subject count
3 (Individual)
Disease: IDC (C509)
DCIS (D051)
Sample description: RNAs extracted from tumor tissues; Tumor / normal
Tumor
Sample provider: N/A
Experimental method: Histological image
Spatial transcriptomics
Target: N/A
Reagent kit: Visium Spatial Gene Expression
Fragmentation: N/A
Platform: Illumina NovaSeq 6000
Read type: Paired-end
Read length: 148 bp (28/120 PE)
Data use policy: NBDC data sharing policy (JGAP000001)