Dataset ID

E-GEAD-744

Name: E-GEAD-744: NGS (Micro-C and Region Capture Micro-C), NGS (CITE-seq and 5' single-cell RNA-seq), NGS (5' and 3' single-cell RNA-seq), NGS (Multimodal assay including single-nucleus ATAC-seq, 3' and 5' single-nucleus RNA-seq, and 5' single-cell RNA-seq), NGS (MAS-seq), NGS (CAGE-seq and NET-CAGE-seq)
Published: 2024-05-14

Type of data: NGS (Micro-C and Region Capture Micro-C)
NGS (CITE-seq and 5' single-cell RNA-seq)
NGS (5' and 3' single-cell RNA-seq)
NGS (Multimodal assay including single-nucleus ATAC-seq, 3' and 5' single-nucleus RNA-seq, and 5' single-cell RNA-seq)
NGS (MAS-seq)
NGS (CAGE-seq and NET-CAGE-seq)
Access criteria: Unrestricted-access
Total data volume: 2.1 GB
File formats: BED
TXT
TAR
Research: hum0350
Date published: 2024-05-14
Date modified: 2024-06-29
DDBJ Search: E-GEAD-744 (opens in a new tab)

Analysis method

snATAC-seq + snRNA-seq (3'/5') + scRNA-seq (5')

Materials and participants: 3 healthy Japanese (9 samples); Health status
Healthy
Subject count
3 (Individual)
Population
Japanese
Sample description: polyA RNA and genomic DNA extracted from CD4 positive T cells isolated from whole blood; Tissue
CD4+ T cell, Peripheral blood
Tumor / normal
Normal
Sample provider: N/A
Experimental method: scATAC-seq
scRNA-seq
Target: N/A
Reagent kit: Chromium Next GEM Single Cell Multiome ATAC + Gene Expression
Chromium Single Cell 5'
Fragmentation: included in the above library construction kit
Platform: Illumina NovaSeq 6000
Read type: Paired-end
Read length: 300 bp
350 bp
Reference genome: GRCh38
Analysis method: Cell Ranger version 5.0.1
Data use policy: NBDC data sharing policy (JGAP000001)