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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
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Dataset ID

DRA003791

Type of data
NGS (Target Capture)
Access criteria
Unrestricted-access
Total data volume
413 MB
File formats
  • FASTQ
Research
hum0005
Date published
2015-10-01
Date modified
2015-07-25
DDBJ Search
DRA003791 (opens in a new tab)

Analysis method

Targeted DNA sequencing

Materials and participants
5 non-syndromic hearing loss patients (ICD10: H90)
  • Health status
    Affected
  • Subject count
    5 (Individual)
Disease
non-syndromic hearing loss patients (H90)
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Targeted DNA sequencing
Target
69 genes
(ACTG1, CABP2, CCDC50, CDH23, CEACAM16, CIB2, CLDN14,
COCH, COL11A2, COL4A6, CRYM, DFNA5, DFNB59, DIAPH1,
ESPN, ESRRB, EYA4, GIPC3, GJB2, GJB3, GJB6, GPSM2, GRHL2,
GRXCR1, HGF, ILDR1, KARS, KCNQ4, LHFPL5, LOXHD1, LRTOMT,
MARVELD2, MIRN96, MSRB3, MYH14, MYH9, MYO15A, MYO1A,
MYO3A, MYO6, MYO7A, OTOA, OTOF, PCDH15, PNPT1, POU3F4,
POU4F3, PRPS1, PTPRQ, RDX, SERPINB6, SLC17A8, SLC26A4,
SLC26A5, SMAC, SMPX, STRC, TECTA, TJP2, TMC1, TMIE,
TMPRSS3, TPRN, TRIOBP, USH1C, USH2A, WFS1, WHRN)
Reagent kit
Ion AmpliSeq Custom Panel
Ion AmpliSeq Library Kit 2.0
Fragmentation
N/A
Platform
Thermo Fisher Scientific Ion PGM
Read type
Single-end
Read length
200 bp
Data use policy
NBDC data sharing policy (JGAP000001)