NBDC Research ID: hum0390.v1
SUMMARY
Aims: To establish a knowledge basis for human reproduction and development by conducting genomic and epigenomic analyses on the cells and tissues of organs essential for pregnancy.
Methods: Total RNA samples from endometrial tissues were subjected to RNA sequencing analysis.
Participants/Materials: Endometrial tissues from chronic endometritis cases and control cases
Dataset ID | Type of Data | Criteria | Release Date |
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JGAS000621 | NGS (RNA-seq) | Controlled-access (Type I) | 2023/06/30 |
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MOLECULAR DATA
Participants/Materials |
chronic endometritis (ICD10: N71.1): 24 cases 33 control cases (without chronic endometritis) |
Targets | RNA-seq |
Target Loci for Capture Methods | - |
Platform | Illumina [HiSeq X Ten] |
Library Source | RNAs extracted from endometrial tissues |
Cell Lines | - |
Library Construction (kit name) | NEBNext Ultra II Directional RNA Library Prep Kit |
Fragmentation Methods | Alkaline hydrolysis of RNA |
Spot Type | Paired-end |
Read Length (without Barcodes, Adaptors, Primers, and Linkers) | 151 bp |
Japanese Genotype-phenotype Archive Dataset ID | JGAD000750 |
Total Data Volume | 100 GB (fastq) |
Comments (Policies) | NBDC policy |
DATA PROVIDER
Principal Investigator: Keiji Kuroda
Affiliation: Center for Reproductive Medicine and Endoscopy, Sugiyama Clinic Marunouchi
Project / Group Name: -
Funds / Grants (Research Project Number):
Name | Title | Project Number |
---|---|---|
Practical Research Project for Rare/Intractable Diseases, Japan Agency for Medical Research and Development (AMED) | Diagnosis of rare diseases and elucidation of molecular pathological states by using epigenetic information | JP22ek0109489 |
PUBLICATIONS
Title | DOI | Dataset ID | |
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1 | Gene expression signatures associated with chronic endometritis revealed by RNA sequencing | doi: 10.3389/fmed.2023.1185284 | JGAD000750 |
2 |
USRES (Controlled-access Data)
Principal Investigator | Affiliation | Country/Region | Research Title | Data in Use (Dataset ID) | Period of Data Use |
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