NBDC Research ID: hum0306.v1
SUMMARY
Aims: Cancer genome sequencing and analysis in international cancer genome collaboration ICGC for establishment of cancer genome catalogue
Methods: Whole genome sequencing with Nanopore sequencer
Participants/Materials: DNA extracted from tumor tissues of 9 liver cancer patients (also analyzed in hum0158 with short-read sequencer)
Dataset ID | Type of Data | Criteria | Release Date |
---|---|---|---|
JGAS000361 | NGS (WGS) | Controlled-access (Type I) | 2021/10/15 |
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MOLECULAR DATA
Participants/Materials | liver cancer (ICD10:C220): 9 cases |
Targets | WGS |
Target Loci for Capture Methods | - |
Platform | Nanopore [MinION] |
Library Source | DNAs extracted from tumor tissues |
Cell Lines | - |
Library Construction (kit name) | SQK-LSK109 |
Fragmentation Methods | - |
Spot Type | Single-end |
Read Length (without Barcodes, Adaptors, Primers, and Linkers) | 4715-12070 bp (7875 bp on average) |
Japanese Genotype-phenotype Archive Dataset ID | JGAD000475 |
Total Data Volume | 201.3 GB (fastq) |
Comments (Policies) | NBDC policy |
DATA PROVIDER
Principal Investigator: Hidewaki Nakagawa
Affiliation: Laboratory of Genome Sequencing Analysis, RIKEN Center for Integrative Medical Sciences
Project / Group Name: -
Funds / Grants (Research Project Number):
Name | Title | Project Number |
---|---|---|
KAKENHI Grant-in-Aid for Scientific Research (A) | Multi-omics analysis for hepato-biliary-pancreatic cancers | 18H04049 |
PUBLICATIONS
Title | DOI | Dataset ID | |
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1 | Aberrant integration of Hepatitis B virus DNA promotes major restructuring of human hepatocellular carcinoma genome architecture | doi: 10.1038/s41467-021-26805-8 | JGAD000475 |
2 |
USRES (Controlled-access Data)
Principal Investigator | Affiliation | Country/Region | Research Title | Data in Use (Dataset ID) | Period of Data Use |
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