NBDC Research ID: hum0297.v1
SUMMARY
Aims: To comprehensively clarify the genetic, neural, experiential and social influences that contribute to the diversity of color vision in humans, using approaches at various levels from genes to cognition.
Methods: Polymorphism analysis of a group of opsin genes related to color vision and their surrounding regions was performed using DNA extracted from saliva.
Participants/Materials: 1 healthy donor
Dataset ID | Type of Data | Criteria | Release Date |
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JGAS000348 | NGS (Target Capture) | Controlled-access (Type I) | 2022/09/15 |
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MOLECULAR DATA
Participants/Materials | 1 healthy donor |
Targets | WGS |
Target Loci for Capture Methods | - |
Platform |
Illumina [NovaSeq 6000] Nanopore [PromethION] |
Library Source | DNAs extracted from saliva of healthy donor |
Cell Lines | - |
Library Construction (kit name) |
Illumina: TruSeq DNA Nano Nanopore: SQK-LSK109 |
Fragmentation Methods |
Illumina: Ultrasonic fragmentation (Covaris) Nanopore: - |
Spot Type |
Illumina: Paired-end Nanopore: Single-end |
Read Length (without Barcodes, Adaptors, Primers, and Linkers) |
Illumina: 300 bp Nanopore: 8248 bp on average |
Japanese Genotype-phenotype Archive Dataset ID | JGAD000462 |
Total Data Volume | 249.5 GB(fastq) |
Comments (Policies) | NBDC policy |
DATA PROVIDER
Principal Investigator: Chihiro Hiramatsu
Affiliation: Sensory Diversity Laboratory Department of Human Science Faculty of Design, Kyushu University
Project / Group Name: Laboratory of Sensory Diversity
Funds / Grants (Research Project Number):
Name | Title | Project Number |
---|---|---|
KAKENHI Grant-in-Aid for Scientific Research (B) | Commonality and diversity of neural representations associated with the conscious experience of color | 19H04198 |
PUBLICATIONS
Title | DOI | Dataset ID | |
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1 | |||
2 |
USRES (Controlled-access Data)
Principal Investigator | Affiliation | Country/Region | Research Title | Data in Use (Dataset ID) | Period of Data Use |
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