NBDC Research ID: hum0192.v1

 

SUMMARY

Aims: Detection of mutation in liquid biopsy (cell free DNA)

Methods: Target sequence by using of NCCv2 Oncopanel

Participants/Materials: Colon cancer patients

 

Dataset IDType of DataCriteriaRelease Date
JGAS000196 NGS (Target Capture) Controlled-access (Type I) 2021/04/23

*Release Note

*Data users need to apply an application for Using NBDC Human Data to reach the Controlled-access Data. Learn more

 

MOLECULAR DATA

JGAS000196

Participants/Materials Colon cancer (ICD10: C18.9, C20): 20 cases
Targets Target Capture
Target Loci for Capture Methods

NCC Oncopanel v2

https://www.ncc.go.jp/en/information/press_release/20190717/20190717152024.html

Platform Illumina [NovaSeq 6000]
Library Source cell free DNA extracted from plasma of peripheral blood
Cell Lines -
Library Construction (kit name) SureSelect XT HS
Fragmentation Methods -
Spot Type Paired-end
Read Length (without Barcodes, Adaptors, Primers, and Linkers) 300 bp
Japanese Genotype-phenotype Archive Dataset ID JGAD000279
Total Data Volume 50 GB (fastq)
Comments (Policies) NBDC policy

 

DATA PROVIDER

Principal Investigator: Masaki Nakamura

Affiliation: Department of Radiation Oncology, National Cancer Center Hospital East

Project / Group Name: -

Funds / Grants (Research Project Number):

NameTitleProject Number
Grant-in-Aid for Early-Career Scientists Research of cell free DNA as a prognostic biomarker of oligometastasis 18K15611

 

PUBLICATIONS

TitleDOIDataset ID
1 Liquid Biopsy Cell-free DNA Biomarkers in Patients With Oligometastatic Colorectal Cancer Treated by Ablative Radiotherapy doi: 10.21873/anticanres.14835 JGAD000279
2

 

USRES (Controlled-access Data)

Principal Investigator: Affiliation: Data in Use (Dataset ID)Period of Data Use