NBDC Research ID: hum0192.v1
SUMMARY
Aims: Detection of mutation in liquid biopsy (cell free DNA)
Methods: Target sequence by using of NCCv2 Oncopanel
Participants/Materials: Colon cancer patients
Dataset ID | Type of Data | Criteria | Release Date |
---|---|---|---|
JGAS000196 | NGS (Target Capture) | Controlled-access (Type I) | 2021/04/23 |
*Data users need to apply an application for Using NBDC Human Data to reach the Controlled-access Data. Learn more
MOLECULAR DATA
Participants/Materials | Colon cancer (ICD10: C18.9, C20): 20 cases |
Targets | Target Capture |
Target Loci for Capture Methods |
NCC Oncopanel v2 https://www.ncc.go.jp/en/information/press_release/20190717/20190717152024.html |
Platform | Illumina [NovaSeq 6000] |
Library Source | cell free DNA extracted from plasma of peripheral blood |
Cell Lines | - |
Library Construction (kit name) | SureSelect XT HS |
Fragmentation Methods | - |
Spot Type | Paired-end |
Read Length (without Barcodes, Adaptors, Primers, and Linkers) | 300 bp |
Japanese Genotype-phenotype Archive Dataset ID | JGAD000279 |
Total Data Volume | 50 GB (fastq) |
Comments (Policies) | NBDC policy |
DATA PROVIDER
Principal Investigator: Masaki Nakamura
Affiliation: Department of Radiation Oncology, National Cancer Center Hospital East
Project / Group Name: -
Funds / Grants (Research Project Number):
Name | Title | Project Number |
---|---|---|
Grant-in-Aid for Early-Career Scientists | Research of cell free DNA as a prognostic biomarker of oligometastasis | 18K15611 |
PUBLICATIONS
Title | DOI | Dataset ID | |
---|---|---|---|
1 | Liquid Biopsy Cell-free DNA Biomarkers in Patients With Oligometastatic Colorectal Cancer Treated by Ablative Radiotherapy | doi: 10.21873/anticanres.14835 | JGAD000279 |
2 |
USRES (Controlled-access Data)
Principal Investigator: | Affiliation: | Data in Use (Dataset ID) | Period of Data Use |
---|---|---|---|