NBDC Research ID: hum0311.v1
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SUMMARY
Aims: The BioBank Japan (BBJ) is a biobank established in the Institute of Medical Science, the University of Tokyo to collect clinical information and biological materials (DNA and serum samples). It collected about 200 thousand participants of 47 diseases started in 2003 (BBJ 1st cohort), and 67 thousand participants of 38 diseases started in 2013 (BBJ 2nd cohort), both in collaboration with 12 medical centers." This project is aiming at further utilization of the materials, and clinical and genomic information managed by BBJ to contribute to precision medicine by storing, managing, and providing the materials and data, as well as identifying biomarkers associated with disease risk, prognosis, and drug sensitivity.
Methods: Asian Screening Array (ASA-24v1-0_A2)
Participants/Materials: 11,716 patients from BBJ 1st cohort and 42,689 patients from BBJ 2nd cohort
URL： https://biobankjp.org/en/index.html
| Data Set ID | Type of Data | Criteria | Release Date |
|---|---|---|---|
| JGAS000412 | Genotype data for 11,716 patients from BBJ 1st cohort and 42,689 patients from BBJ 2nd cohort | Controlled Access (Type I) | 2021/11/30 |
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MOLECULAR DATA
| Participants/Materials |
11,716 patients from BBJ 1st cohort and 42,689 patients from BBJ 2nd cohort ICD10: C34, C15, C16, C18-C21, C22, C25, C23, C24, C61, C50, C53, C54, C56, C81-C86, C90-C93, I63, G45.9, I67.1, G40, J45, A15-A19, J44.9, J84.1-9, I21.0-9, I20.0, I20.1, I20.8, I20.9, R00, I44.0-3, I45.5-6, I47-I49, I50, I70.9, B18.1, B18.2, K74.6, N04, N20-N23, M80-M81, E10, E11, E88.8, E78.0-5, E78.8-9, E05.0, M05-M06, J30.1, L91.0, L20, L51.1-2, L27.0, D25, N80, R56.0, H40, H25-H26, K05, G12.2, I61, C64 |
| Targets | genome wide SNPs |
| Target Loci for Capture Methods | - |
| Platform | Illumina [Asian Screening Array (ASA-24v1-0_A2)] |
| Library Source | DNAs extracted from peripheral blood cells or saliva |
| Cell Lines | - |
| Reagents (Kit, Version) | Infinium Asian Screening Array-24 v1.0 BeadChip Kit |
| Genotype Call Methods (software) | GenomeStudio |
| Marker Number (after QC) | 657,060 SNVs (GRCh38) |
| Japanese Genotype-phenotype Archive Data set ID | JGAD000529 |
| Total Data Volume | 1,020 GB (idat, csv, plink binary) |
| Comments (Policies) | NBDC policy |
DATA PROVIDER
Principal Investigator: Koichi Matsuda
Affiliation: Graduate school of Frontier Science, The University of Tokyo
Project / Group Name: Management of disease-oriented biobank in Japan for utilization
URL： https://biobankjp.org/en/index.html
Funds / Grants (Research Project Number):
| Name | Title | Project Number |
|---|---|---|
| Biobank - Construction and Utilization biobank for genomic medicine REalization (B-Cure), Japan Agency for Medical Research and Development (AMED) | Management of disease-oriented biobank in Japan for utilization | JP20km0605001 |
PUBLICATIONS
| Title | DOI | Data Set ID | |
|---|---|---|---|
| 1 | |||
| 2 |
USERS (Controlled-Access Data)
| Principal Investigator | Affiliation | Research Title | Data in Use (Data Set ID) | Period of Data Use |
|---|---|---|---|---|
