NBDC Research ID: hum0249.v1
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SUMMARY
Aims: Elucidation of pathological conditions and development of therapeutic methods using iPS cells derived from patients with hard tissue/connective tissue related diseases
Methods: Cap Analysis of Gene Expression (CAGE)-seq
Participants/Materials: iPS cells derived from patients with hard tissue/connective tissue related diseases
| Dataset ID | Type of Data | Criteria | Release Date |
|---|---|---|---|
| JGAS000248 | NGS (CAGE-seq) | Controlled-access (Type I) | 2020/09/01 |
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MOLECULAR DATA
| Participants/Materials |
hard tissue/connective tissue related diseases (ICD10: Q870): 3 cases osteoblast differentiated from iPS cells established from oral mucosa fibroblast: 2 cases (2 samples) osteoblast differentiated from iPS cells established from oral mucosa fibroblast (mutation-corrected iPS cells by gene editing): 1 case (1 sample) |
| Targets | CAGE-seq |
| Target Loci for Capture Methods | - |
| Platform | Illumina [NextSeq 500] |
| Library Source | RNA extracted from osteoblast differentiated from iPS cells |
| Cell Lines | - |
| Library Construction (kit name) | nAnT-iCAGE protocol |
| Fragmentation Methods | - |
| Spot Type | Single-end |
| Read Length (without Barcodes, Adaptors, Primers, and Linkers) | 47 bp |
| Japanese Genotype-phenotype Archive Dataset ID | JGAD000348 |
| Total Data Volume | 39 GB (fastq) |
| Comments (Policies) | NBDC policy |
DATA PROVIDER
Principal Investigator: Toshifumi Azuma
Affiliation: Tokyo Dental College / Biochemistry
Project / Group Name:Tokyo Dental College Research Branding Project
Funds / Grants (Research Project Number):
| Name | Title | Project Number |
|---|---|---|
| KAKENHI Grant-in-Aid for Scientific Research (C) | The osteoblast differentiation control mechanism based on a new concept | 19K10063 |
| KAKENHI Grant-in-Aid for Scientific Research (B) | The osteoblast differentiation and calcification mechanism of GNAS-cAMP pathway using diseased iPS cells | 18H03007 |
| Tokyo Dental College Research Branding Project |
PUBLICATIONS
| Title | DOI | Dataset ID | |
|---|---|---|---|
| 1 | CAGE-seq analysis of osteoblast derived from cleidocranial dysplasia human induced pluripotent stem cells | doi: 10.1016/j.bone.2020.115582 | JGAD000348 |
| 2 |
USRES (Controlled-access Data)
| Principal Investigator | Affiliation | Country/Region | Research Title | Data in Use (Dataset ID) | Period of Data Use |
|---|---|---|---|---|---|
