NBDC Research ID: hum0239.v1
SUMMARY
Aims: To reveal the genome profiles in urothelial bladder cancer
Methods: Amplicon Target Sequencing Analysis
Participants/Materials: Patients with urothelial bladder cancer
| Dataset ID | Type of Data | Criteria | Release Date |
|---|---|---|---|
| JGAS000241 | NGS (Target Capture) | Controlled-access (Type I) | 2020/07/27 |
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MOLECULAR DATA
| Participants/Materials | Urothelial bladder cancer (ICD10: C67): 19 cases (19 tumor tissues) |
| Targets | Target Capture |
| Target Loci for Capture Methods |
exon regions of 71 urothelial bladder cancer-associated genes
|
| Platform | Thermo Fisher Scientific [Ion Proton] |
| Library Source | DNAs extracted from tumor tissues |
| Cell Lines | - |
| Library Construction (kit name) | IonAmpliSeq Plus Kit |
| Fragmentation Methods | - |
| Spot Type | Single-end |
| Read Length (without Barcodes, Adaptors, Primers, and Linkers) | 200 bp |
| Japanese Genotype-phenotype Archive Dataset ID | JGAD000341 |
| Total Data Volume | 74 GB (bam) |
| Comments (Policies) | NBDC policy & Company User Limit |
DATA PROVIDER
Principal Investigator: Yosuke Hirotsu
Affiliation: Genome Analysis Center, Yamanashi Central Hospital
Project / Group Name: -
Funds / Grants (Research Project Number):
| Name | Title | Project Number |
|---|---|---|
| - |
PUBLICATIONS
| Title | DOI | Dataset ID | |
|---|---|---|---|
| 1 | Genomic Profiling Identified ERCC2 E606Q Mutation in Helicase Domain Respond to Platinum-Based Neoadjuvant Therapy in Urothelial Bladder Cancer | doi: 10.3389/fonc.2020.01643 | JGAD000341 |
| 2 |
USRES (Controlled-access Data)
| Principal Investigator | Affiliation | Country/Region | Research Title | Data in Use (Dataset ID) | Period of Data Use |
|---|---|---|---|---|---|
