hum0201 Release Note
| Research ID | Release Date | Type of Data |
|---|---|---|
| hum0201.v8 | 2024/08/28 | NGS (Exome, RNA-seq, scRNA-seq, ATAC-seq, ChIP-seq) |
| hum0201.v7 | 2022/12/27 | Processed data of JGAD000335 by JGA |
| hum0201.v6 | 2022/08/05 | NGS (scRNA-seq, RNA-seq, Exome) |
| hum0201.v5 | 2022/06/06 | NGS (RNA-seq) |
| hum0201.v4 | 2021/11/19 | NGS (RNA-seq, ChIP-seq) |
| hum0201.v3 | 2020/11/20 | NGS (RNA-seq) |
| hum0201.v2 | 2020/10/06 | NGS (WGS, RNA-seq) |
| hum0201.v1 | 2019/12/20 | NGS (Exome) |
hum0201.v8
DNAs/RNAs extracted from pancreatic cancer organoids or genetically engineered pancreatic duct organoids were used for the whole exome, RNA, scRNA, ATAC and ChIP sequencing analyses. Fastq and bed files are provided.
hum0201.v7
The alignment results [CRAM], variant call results per sample [gVCF], and variant call results per dataset [aggregated VCF] processed JGAD000335 in a certain workflow were provided. If you plan to use the data, please indicate both original data (JGAD000335) and processed data (JGAD000687) on the application form for data use.
hum0201.v6
RNAs extracted from normal colonic tissue from a neoplastic disease patient was used for the single cell RNA sequencing analysis. DNAs and RNAs extracted from organoids established from healthy normal colonic tissues of the patients were used for the whole genome and RNA sequencing analyses. Fastq files are provided.
hum0201.v5
RNAs extracted from organoids derived from colon cancer tissues from neoplastic disease patients were used for the RNA sequencing analysis. Fastq files are provided.
hum0201.v4
DNAs and RNAs extracted from organoids established from colon cancer tissues and a normal epithelial tissue of the patients were used for RNA sequencing and ChIP-seq analyses. Fastq files are provided.
hum0201.v3
Gene expression of 2D normal duodenum organoids with or without medium rotation was analyzed. Total RNA was extracted from organoids with or without a four-day medium rotation, and after 0, 1, 2 or 4 days of medium rotation, and sequenced with HiSeq X Ten. Fastq files are provided.
hum0201.v2
DNAs and RNAs extracted from peripheral blood cells and organoids established from normal and cancer tissues of the patients were used for the whole genome and RNA sequencing analysis. Fastq files are provided.
hum0201.v1
DNAs extracted from inflammatory/tumor tissues from gastrointestinal inflammatory disease patients, peripheral blood cells from patients/controls, and the organoids established from epithelial tissues from patients were used for the whole exome sequencing analysis. Fastq files are provided.
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