hum0197 Release Note
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| Research ID | Release Date | Type of Data |
|---|---|---|
| hum0197.v22 | 2024/11/11 | NGS (WGS, RNA-seq) |
| hum0197.v21 | 2024/10/28 | GWAS for autoimmune diseases, The presence or absence of endogenous herpesvirus 6 and anellovirus load calculated from NGS (WGS) for autoimmune diseases, scRNA-seq for eHHV-6-positive/negative SLE, GWAS for the individual Jomon proportions |
| hum0197.v20 | 2024/05/30 | GWAS for recurrent pregnancy loss |
| hum0197.v19 | 2024/05/29 | The weights of variants calculated from GWAS results on type 2 diabetes |
| hum0197.v18 | 2023/10/02 | GWAS for gut microbiome, plasma metabolite, KEGG Gene Ortholog and KEGG Pathway |
| hum0197.v17 | 2023/06/27 | GWAS for Hunner-type interstitial cystitis |
| hum0197.v16 | 2023/06/06 | GWAS for 15 phenotypes |
| hum0197.v15 | 2023/03/29 | Metagenome |
| hum0197.v14 | 2023/02/16 | GWAS for 5 phenotypes |
| hum0197.v13 | 2023/02/14 | Raw sequencing data of single-cell RNA-seq, clinical data |
| hum0197.v12 | 2022/12/01 | Microbial genome: MAG, Viral genome, CRISPR spacers |
| hum0197.v11 | 2022/07/21 | Raw sequencing data of single-cell RNA-seq |
| hum0197.v10 | 2022/06/16 | GWAS for 9 phenotypes |
| hum0197.v9 | 2022/06/10 | GWAS for Intracranial germ cell tumors |
| hum0197.v8 | 2022/06/03 | Metagenome |
| hum0197.v7 | 2022/05/23 | Metagenome |
| hum0197.v6 | 2022/02/08 | Read count data of miRNA, eQTL summary data |
| hum0197.v5 | 2021/12/21 | GWAS for 10 phenotypes, Fine-mapping for 79 phenotypes |
| hum0197.v4 | 2021/12/10 | Metagenome |
| hum0197.v3 | 2021/03/22 | GWAS for 215 phenotypes |
| hum0197.v2 | 2020/11/27 | GWAS for autoimmune pulmonary alveolar proteinosis, Metagenome |
| hum0197.v1 | 2019/11/15 | Metagenome |
hum0197.v22
- DNAs extracted from tumor tissues and blood samples of 14 HPV-associated oropharyngeal cancer patients were subjected to whole-genome sequencing. Fastq files are provided.
- RNAs extracted from tumor tissues of 19 HPV-associated oropharyngeal cancer patients and 17 Non-HPV-associated oropharyngeal cancer patients and normal tonsils of two healthy controls were subjected to bulk RNA sequencing. Fastq files are provided.
hum0197.v21
- DNAs extracted from peripheral blood of patients with autoimmune diseases and control participants were used for whole genome sequencing. The presence or absence of endogenous herpesvirus 6 and anellovirus load calculated from WGS are provided (tsv file).
- DNAs extracted from peripheral blood cells of patients with eHHV-6B-positive/-negative autoimmune diseases were genotyped, imputed, and genome-wide association study was performed (tsv file).
- RNAs extracted from PBMCs of eHHV-6B-positive/-negative SLE patients were subjected to single-cell RNA-seq analysis. (fastq files).
- DNAs extracted from the Japanese populations were genotyped, imputed, and genome-wide association study for the individual Jomon proportions was performed (text file).
hum0197.v20
DNAs extracted from peripheral blood cells of patients with recurrent pregnancy loss were genotyped, imputed, and genome-wide association study was performed (text file).
hum0197.v19
The weights of variants existing in the target cohorts, Tohoku Medical Megabank and the second cohort of BBJ, were calculated from GWAS results on 27,642 type 2 diabetes cases and 70,242 controls from BioBank Japan and 27,642 type 2 diabetes cases and 70,242 controls from UK Biobank (text file).
hum0197.v18
DNAs extracted from the Japanese populations were genotyped, imputed, and genome-wide association studies for gut microbiome, plasma metabolite, KEGG Gene Ortholog and KEGG Pathway were performed (text file).
hum0197.v17
DNAs extracted from peripheral blood cells of patients with Hunner-type interstitial cystitis were genotyped, imputed, and genome-wide association study was performed (text file).
hum0197.v16
DNAs extracted from the Japanese and trans-ethnic populations were genotyped, imputed, and genome-wide association studies and meta analyses for 15 phenotypes were performed (text file).
hum0197.v15
Metagenome analyses of the gut microbiome in the Japanese population and healthy individuals were performed by utilizing whole-genome shotgun sequencing. Fastq files are provided.
- Shotgun sequencing data for 88 Japanese individuals
- Shotgun sequencing data for 73 healthy individuals (DNA extraction was performed with phenol-chloroform extraction). Among these individuals, 47 were also subjected to DNA extraction with DNeasy PowerSoil Pro kit and sequenced.
- Deep shotgun sequencing data for 5 Japanese individuals
hum0197.v14
DNAs extracted from the Japanese and trans-ethnic populations were genotyped, imputed, and genome-wide association studies and meta analyses for 5 phenotypes were performed (text file).
hum0197.v13
RNAs extracted from PBMCs of 43 COVID-19 patients and 44 healthy controls were subjected to single-cell RNA-seq analysis. Fastq files are provided. Clinical data for hum0197.v11 and hum0197.v13 are provided as xlsx files.
hum0197.v12
Assembled microbial genome sequences obteined from metagenome analysis at hum0197.v7 and hum0197.v8 are provided (fasta files).
hum0197.v11
RNAs extracted from PBMCs of 30 COVID-19 patients and 31 healthy controls were subjected to single-cell RNA-seq analysis. Fastq files are provided.
hum0197.v10
DNAs extracted from the Japanese and British populations were genotyped, imputed, genome-wide association studies, and meta analyses for 9 phenotypes were performed (text file).
hum0197.v9
DNAs extracted from patients with intracranial germ cell tumors were genotyped, imputed, and performed a genome-wide association study (text file).
hum0197.v8
Metagenome analysis of the gut microbiome in the Japanese population was performed by utilizing whole-genome shotgun sequencing. Fastq files are provided.
hum0197.v7
A metagenome-wide association study of gut microbiome in Inflammatory Bowel Disease (35 Ulcerative Colitis and 39 Crohn's disease) and 40 Healthy controls was performed by utilizing whole-genome shotgun sequencing. Fastq files are provided.
hum0197.v6
- RNAs extracted from PBMCs of 141 Japanese individuals were subjected to small RNA-seq analysis. Read count data of miRNAs is provided as a txt file.
- gDNAs extracted from whole blood of 141 Japanese individuals were subjected to whole genome sequencing analysis. miRNA-eQTL mapping was performed. eQTL summary data is provided as a txt file.
hum0197.v5
- DNAs extracted from the Japanese populations were genotyped, imputed, and genome-wide association study for 10 phenotypes were performed (text file).
- DNAs extracted from the Japanese populations were genotyped, imputed, and fine-mapping study for 79 phenotypes were performed (text file).
hum0197.v4
A metagenome-wide association study of gut microbiome in the Japanese population was performed by utilizing whole-genome shotgun sequencing. Fastq files are provided.
hum0197.v3
DNAs extracted from the Japanese and trans-ethnic populations were genotyped, imputed, and genome-wide association studies and meta analyses for 215 phenotypes were performed (text file).
hum0197.v2
- DNAs extracted from autoimmune pulmonary alveolar proteinosis patients were genotyped, imputed, and genome-wide association study was performed (text file).
- A metagenome-wide association study of gut microbiome in the Japanese population was performed by utilizing whole-genome shotgun sequencing. Fastq files are provided.
hum0197.v1
A metagenome-wide association study of gut microbiome in the Japanese population was performed by utilizing whole-genome shotgun sequencing. Fastq files are provided.
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