hum0197 Release Note
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| Research ID | Release Date | Type of Data |
|---|---|---|
| hum0197.v15 | 2023/03/29 | Metagenome |
| hum0197.v14 | 2023/02/16 | GWAS for 5 phenotypes |
| hum0197.v13 | 2023/02/14 | Raw sequencing data of single-cell RNA-seq, clinical data |
| hum0197.v12 | 2022/12/01 | Microbial genome: MAG, Viral genome, CRISPR spacers |
| hum0197.v11 | 2022/07/21 | Raw sequencing data of single-cell RNA-seq |
| hum0197.v10 | 2022/06/16 | GWAS for 9 phenotypes |
| hum0197.v9 | 2022/06/10 | GWAS for Intracranial germ cell tumors |
| hum0197.v8 | 2022/06/03 | Metagenome |
| hum0197.v7 | 2022/05/23 | Metagenome |
| hum0197.v6 | 2022/02/08 | Read count data of miRNA, eQTL summary data |
| hum0197.v5 | 2021/12/21 | GWAS for 10 phenotypes, Fine-mapping for 79 phenotypes |
| hum0197.v4 | 2021/12/10 | Metagenome |
| hum0197.v3 | 2021/03/22 | GWAS for 215 phenotypes |
| hum0197.v2 | 2020/11/27 | GWAS for autoimmune pulmonary alveolar proteinosis, Metagenome |
| hum0197.v1 | 2019/11/15 | Metagenome |
hum0197.v15
Metagenome analyses of the gut microbiome in the Japanese population and healthy individuals were performed by utilizing whole-genome shotgun sequencing. Fastq files are provided.
- Shotgun sequencing data for 88 Japanese individuals
- Shotgun sequencing data for 73 healthy individuals (DNA extraction was performed with phenol-chloroform extraction). Among these individuals, 47 were also subjected to DNA extraction with DNeasy PowerSoil Pro kit and sequenced.
- Deep shotgun sequencing data for 5 Japanese individuals
hum0197.v14
DNAs extracted from the Japanese and trans-ethnic populations were genotyped, imputed, and genome-wide association studies and meta analyses for 5 phenotypes were performed (text file).
hum0197.v13
RNAs extracted from PBMCs of 43 COVID-19 patients and 44 healthy controls were subjected to single-cell RNA-seq analysis. Fastq files are provided. Clinical data for hum0197.v11 and hum0197.v13 are provided as xlsx files.
hum0197.v12
Assembled microbial genome sequences obteined from metagenome analysis at hum0197.v7 and hum0197.v8 are provided (fasta files).
hum0197.v11
RNAs extracted from PBMCs of 30 COVID-19 patients and 31 healthy controls were subjected to single-cell RNA-seq analysis. Fastq files are provided.
hum0197.v10
DNAs extracted from the Japanese and British populations were genotyped, imputed, genome-wide association studies, and meta analyses for 9 phenotypes were performed (text file).
hum0197.v9
DNAs extracted from patients with intracranial germ cell tumors were genotyped, imputed, and performed a genome-wide association study (text file).
hum0197.v8
Metagenome analysis of the gut microbiome in the Japanese population was performed by utilizing whole-genome shotgun sequencing. Fastq files are provided.
hum0197.v7
A metagenome-wide association study of gut microbiome in Inflammatory Bowel Disease (35 Ulcerative Colitis and 39 Crohn's disease) and 40 Healthy controls was performed by utilizing whole-genome shotgun sequencing. Fastq files are provided.
hum0197.v6
- RNAs extracted from PBMCs of 141 Japanese individuals were subjected to small RNA-seq analysis. Read count data of miRNAs is provided as a txt file.
- gDNAs extracted from whole blood of 141 Japanese individuals were subjected to whole genome sequencing analysis. miRNA-eQTL mapping was performed. eQTL summary data is provided as a txt file.
hum0197.v5
- DNAs extracted from the Japanese populations were genotyped, imputed, and genome-wide association study for 10 phenotypes were performed (text file).
- DNAs extracted from the Japanese populations were genotyped, imputed, and fine-mapping study for 79 phenotypes were performed (text file).
hum0197.v4
A metagenome-wide association study of gut microbiome in the Japanese population was performed by utilizing whole-genome shotgun sequencing. Fastq files are provided.
hum0197.v3
DNAs extracted from the Japanese and trans-ethnic populations were genotyped, imputed, and genome-wide association studies and meta analyses for 215 phenotypes were performed (text file).
hum0197.v2
- DNAs extracted from autoimmune pulmonary alveolar proteinosis patients were genotyped, imputed, and genome-wide association study was performed (text file).
- A metagenome-wide association study of gut microbiome in the Japanese population was performed by utilizing whole-genome shotgun sequencing. Fastq files are provided.
hum0197.v1
A metagenome-wide association study of gut microbiome in the Japanese population was performed by utilizing whole-genome shotgun sequencing. Fastq files are provided.
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