NBDC Research ID: hum0197.v1

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SUMMARY

Aims: Elucidation of gut microbiome’s role in human biology

Methods: A comprehensive metagenome-wide association study by utilizing whole-genome shotgun sequencing

Participants/Materials: Metagenomic data of gut microbiome in the Japanese population

 

Data Set IDType of DataCriteriaRelease Date
JGAS000205 Metagenome Controlled Access (Type I) 2019/11/15

*Release Note

* Data users need to apply an application for Using NBDC Human Data to reach the Controlled-access Data.

 

MOLECULAR DATA

JGAS000205
Participants/Materials: 95 Japanese individuals
Targets Metagenome
Target Loci for Capture Methods -
Platform Illumina [HiSeq 3000]
Library Source DNA extracted from gut microbiome
Cell Lines -
Library Construction (kit name) KAPA Hyper Prep Kit
Fragmentation Methods Ultrasonic fragmentation (Covaris)
Spot Type Paired-end
Read Length (without Barcodes, Adaptors, Primers, and Linkers) 150 bp
Japanese Genotype-phenotype Archive Data set ID JGAD000290
Total Data Volume 477 GB (fastq)
Comments (Policies) NBDC policy

 

DATA PROVIDER

Principal Investigator: Yukinori Okada

Affiliation: Department of Statistical Genetics, Osaka University Graduate School of Medicine

Project / Group Name： -

Funds / Grants (Research Project Number):

NameTitleProject Number
Advanced Research & Development Programs for Medical Innovation, Japan Agency for Medical Research and Development (AMED-PRIME) Crosstalk among microbiome, host, disease, and drug discovery enhanced by statistical genetics 19gm6010001h0004

 

PUBLICATIONS

TitleDOIData Set ID
1 Metagenome-wide association study of gut microbiome revealed novel aetiology of rheumatoid arthritis in the Japanese population. doi: 10.1136/annrheumdis-2019-215743 JGAD000290
2

 

USRES (Controlled-Access Data)

Principal Investigator: Affiliation: Data in Use (Data Set ID)Period of Data Use