NBDC Research ID: hum0039.v1
SUMMARY
Aims: To clarify the mechanism of TKI resistant in gastrointstinal stromal tumors
Methods: Exome DNA sequence analysis for imatinib resistant gastrointestinal stromal tumor (GIST)
Participants/Materials: GIST diagnosed pathologically as a imatinib resistant lesion
| Dataset ID | Type of Data | Criteria | Release Date |
|---|---|---|---|
| JGAS000039 |
NGS (Exome) | Controlled-access (Type I) | 2016/12/27 |
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MOLECULAR DATA
| Participants/Materials | Imatinib resistant GIST : 4 cases |
| Targets | NGS (Exome) |
| Target Loci for Capture Methods | - |
| Platform | Illumina [HiSeq 1500] |
| Library Source | gDNA from Surgical tumor specimen |
| Cell Lines | - |
| Library Construction (kit name) | SureSelect Human All Exon V5+UTRs |
| Fragmentation Methods | Ultrasonic fragmentation (Covaris) |
| Spot Type | Paired-end |
| Read Length (without Barcodes, Adaptors, Primers, and Linkers) | 101 bp |
| Japanese Genotype-phenotype Archive Dataset ID | JGAD000039 |
| Total Data Volume | 202 GB (fastq) |
| Comments (Policies) | NBDC policy & hum0039 policy |
DATA PROVIDER
Principal Investigator: Tsuyoshi Takahashi
Affiliation: Department of Surgery, Osaka university graduate school of medicine
Project / Group Name: -
Funds / Grants (Research Project Number):
| Name | Title | Project Number |
|---|---|---|
| - | - | - |
PUBLICATIONS
| Title | DOI | Dataset ID | |
|---|---|---|---|
| 1 | - | - | - |
| 2 |
USERS (Controlled-access Data)
| Principal Investigator: | Affiliation: | Data in Use (Dataset ID) | Period of Data Use |
|---|---|---|---|
