NBDC Research ID: hum0014.v1
Click to Latest version.
SUMMARY
Aims: Identify myocardial infarction (MI) susceptibility loci in Japanese
Methods: A Genome-Wide Association Study (GWAS) for MI was performed using 456,000 SNPs (Illumina Human610-Quad BeadChip and HumanHap550v3 Genotyping BeadChip)
Participants/Materials: 1666 MI patients and 3198 controls
URL： http://www.biobankjp.org/english/index.html
| Data Set ID | Type of Data | Criteria | Release Date |
|---|---|---|---|
| hum0014.v1.freq.v1 | GWAS for MI | Un-restricted Access | 2014/9/30 |
MOLECULAR DATA
| Participants/Materials | 1666 MI patients and 3198 controls |
| Targets | genome wide SNVs |
| Target Loci for Captur Methods |
- |
| Platform | Illumina [Human610-Quad BeadChip, HumanHap550v3 Genotyping BeadChip] |
| Source | gDNA extracted from peripheral blood cells |
| Cell Lines | - |
| Reagents (Kit, Version)< /span> | Illumina Human610-Quad Beadchip |
| Genotype Call Methods (software) | GenCall software (GenomeStudio) |
| Filtering Methods | Sample Call rate ≧ 0.98, SNP call rate ≧ 0.99, HWE P ≧ 1 x 10^-6 |
| Marker Number (after QC) | 455,781 SNPs |
| NBDC Data Set ID |
(Click the Data Set ID to download the file) |
| Total Data Volume | 71.3MB |
| Comments (Policies) |
When the research results including the data which were downloaded from NHA/DRA, are published or presented somewhere, the data user must refer the papers which are related to the data, or include in the acknowledgment. Learn more
DATA PROVIDER
Principal Investigator: Michiaki Kubo
Affiliation: RIKEN Center for Integrative Medical Sciences
Project / Group Name: Tailor-made Medical Treatment Program (Bio Bank Japan: BBJ)
URL： http://www.biobankjp.org/english/index.html
Funds / Grants (Research Project Number):
| Name | Title | Project Number |
|---|---|---|
|
Ministry of Education, Culture, Sports, Science and TechnologyJapan |
Taolor-made Medical Treatment Program (the 3rd phase) |
- |
PUBLICATIONS
| Title | DOI | Data Set ID | |
|---|---|---|---|
| 1 | A genome-wide association study identifies PLCL2 and AP3D1-DOT1L-SF3A2 as new susceptibility loci for myocardial infarction in Japanese. | doi:10.1038/ejhg.2014.110 | hum0014.v1.freq.v1 |
| 2 |
