NBDC Research ID: hum0010.v1
SUMMARY
Aims: Identification of candidate genes for splenic epidermoid cyst.
Methods: Whole exome sequence analysis using Illumina HiSeq 2000.
Participants/Materials: Patients of splenic epidermoid cyst.
| Dataset ID | Type of Data | Criteria | Release Date |
|---|---|---|---|
| JGAS000008 | NGS (Exome) | Controlled-access (Type I) | 2015/6/23 |
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MOLECULAR DATA
| Participants/Materials | 8 patients of splenic epidermoid cyst |
| Targets | Exome |
| Target Loci for Capture Methods | - |
| Platform | Illumina [HiSeq 2000] |
| Library Source | gDNA extracted from peripheral blood cells |
| Cell Lines | - |
| Library Construction (kit name) | SureSelect Human All Exon 50 Mb Kit |
| Fragmentation Methods | Ultrasonic fragmentation (Covaris) |
| Spot Type | Paired-end |
| Read Length (without Barcodes, Adaptors, Primers, and Linkers) | 150 bp |
| Japanese Genotype-phenotype Archive Dataset ID | JGAD000008 |
| Total Data Volume | 84 GB (16 files) |
| Comments (Policies) | NBDC policy |
DATA PROVIDER
Principal Investigator: Matsufuji Hiroshi
Affiliation: Kagoshima University Graduate School of Medical and Dental Sciences
Project / Group Name: -
Funds / Grants (Research Project Number):
| Name | Title | Project Number |
|---|---|---|
| - | - | - |
PUBLICATIONS
| Title | DOI | Dataset ID | |
|---|---|---|---|
| 1 | Genome-wide linkage and exome analyses identify variants of HMCN1 for splenic epidermoid cyst. | doi: 10.1186/s12881-014-0115-4 | JGAD000008 |
| 2 |
USERS (Controlled-access Data)
| Principal Investigator: | Affiliation: | Data in Use (Dataset ID) | Period of Data Use |
|---|---|---|---|
