hum0006 Release Note
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| Research ID | Release Date | Type of Data |
|---|---|---|
| hum0006.v2 | 2017/06/05 | NGS (Exome, RNA-seq), Methylation array |
| hum0006.v1 | 2014/01/31 | NGS (Exome) |
hum0006.v2
Analysis data about 16 oligodendrogliomas were added to JGAS000004.
• Exome: 48 samples
DNAs extracted from brain tumors (oligodendrogliomas) and peripheral blood were used for the whole exome sequencing. Exons were narrowed down by using of SureSelect Human All Exon v.4 and read by Illumina HiSeq 2000 (paired-end: 100 bp)
• RNA-seq: 27 samples
RNAs extracted from brain tumors (oligodendrogliomas) were used for RNA-seq (bam and fastaq). RNA liberally builded using TruSeq Stranded Total RNA Library Prep Kit and read by Illumina HiSeq 2000 (paired-end: 100 bp)
• Methylation array: 30 samples
DNAs extracted from brain tumors (oligodendrogliomas) were performed with methylation analysis using Illumina HumanMethylation 450 BeadChip.
hum0006.v1
DNAs extracted from brain tumors (6 astrocytomas) and peripheral blood were used for the whole exome sequencing (bam files). Exons were narrowed down by using of SureSelect Human All Exon v.4 and read by Illumina HiSeq 2000 (paired-end: 100 bp)
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