NBDC Research ID: hum0369.v1
SUMMARY
Aims: There have been cases of what appear to be nosocomial infections among healthcare workers at several hospitals. The infected healthcare workers were assumed to have contracted the disease through close contact with infected patients. However, we confirmed at each hospital that there were many healthcare workers who had apparently had closer contact with infected patients than the infected healthcare workers but had not contracted the disease. The purpose of this study was to clarify the internal factors that make individuals less susceptible to novel coronavirus infection and their stress tolerance and to establish a system that contributes to the appropriate allocation of healthcare workers and the creation of a system that can more safely deal with this disease in the future.
Methods: Amplicon sequencing was performed using genomic DNA purified from peripheral blood.
Participants/Materials: 139 healthy individuals who had contacted patients infected with novel coronavirus but did not contract novel coronavirus
URL： https://center6.umin.ac.jp/cgi-open-bin/ctr_e/ctr_view.cgi?recptno=R000047878
| Dataset ID | Type of Data | Criteria | Release Date |
|---|---|---|---|
| JGAS000562 | NGS (Target Capture) | Controlled-access (Type I) | 2022/09/28 |
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| Participants/Materials | 139 healthy individuals |
| Targets | Target Capture |
| Target Loci for Capture Methods | TMPRSS2, MxA, ACE2, IFNL3, and IFNL4 |
| Platform | Illumina [NextSeq 500] |
| Library Source | DNAs extracted from peripheral blood cells |
| Cell Lines | - |
| Library Construction (kit name) | PCR amplicon sequencing (QIAseq Targeted DNA Custom Panel) |
| Fragmentation Methods | Enzymatic fragmentation |
| Spot Type | Paired-end |
| Read Length (without Barcodes, Adaptors, Primers, and Linkers) | 150 bp |
| Japanese Genotype-phenotype Archive Dataset ID | JGAD000684 |
| Total Data Volume | 7.8 GB (fastq) |
| Comments (Policies) | NBDC policy |
DATA PROVIDER
Principal Investigator: Atsushi Kawaguchi
Affiliation: Division of Molecular Virology, Faculty of Medicine, University of Tsukuba
Project / Group Name: -
Funds / Grants (Research Project Number):
| Name | Title | Project Number |
|---|---|---|
| Health, Labour and Welfare Sciences Research Grants for Special Research | Study to establish protective measures for health care workers treating COVID-19 infections | 20CA2055 |
PUBLICATIONS
| Title | DOI | Dataset ID | |
|---|---|---|---|
| 1 | |||
| 2 |
USRES (Controlled-access Data)
| Principal Investigator | Affiliation | Country/Region | Research Title | Data in Use (Dataset ID) | Period of Data Use |
|---|---|---|---|---|---|
