NBDC Research ID: hum0323.v1
SUMMARY
Aims: Exploration of biomarkers for early diagnosis and prognosis of colon cancer.
Methods: RNA extracts of colon cancer tissues dissected by surgery are subjected to CAGE profiling.
Participants/Materials: 45 colon cancers
Dataset ID | Type of Data | Criteria | Release Date |
---|---|---|---|
JGAS000489 | NGS (CAGE-seq) | Controlled-access (Type I) | 2022/01/24 |
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MOLECULAR DATA
Participants/Materials | colon cancer (ICD10: C18.9): 45 cases |
Targets | CAGE-seq |
Target Loci for Capture Methods | - |
Platform | Illumina [HiSeq 2500] |
Library Source | RNA extracted from surgically dissected tumor tissues |
Cell Lines | - |
Library Construction (kit name) | CAGE assay (*References) |
Fragmentation Methods | - |
Spot Type | Single-end |
Read Length (without Barcodes, Adaptors, Primers, and Linkers) | 47 bp |
Japanese Genotype-phenotype Archive Dataset ID | JGAD000606 |
Total Data Volume | 19.2 GB (fastq) |
Comments (Policies) | NBDC policy |
1) Detecting expressed genes using CAGE. Methods Mol Biol. 2014; 1164:67–85. (doi: 10.1007/978-1-4939-0805-9_7)
DATA PROVIDER
Principal Investigator: Yasushi Kogo
Affiliation: RIKEN Cluster for Science, Technology and Innovation Hub
Project / Group Name:Genome-wide exploration for diagnostic biomarkers in colon cancer by using CAGE (Kazuhiro Sakamoto, Kiichi Sugimoto at Juntendo University; Yoshihide Hayashizaki at RIKEN Preventive Medicine & Diagnosis Innovation Program)
Funds / Grants (Research Project Number):
Name | Title | Project Number |
---|---|---|
Research Grant to RIKEN Omics Science Center from MEXT | - | - |
Research Grant to RIKEN Preventive Medicine and Diagnosis Innovation Program from MEXT | - | - |
PUBLICATIONS
Title | DOI | Dataset ID | |
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1 | |||
2 |
USRES (Controlled-access Data)
Principal Investigator | Affiliation | Country/Region | Research Title | Data in Use (Dataset ID) | Period of Data Use |
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