{"id":"hum0179","version":1,"url":"https://humandbs.dbcls.jp/research/hum0179/v1","datePublished":"2020-04-03","versions":[{"version":1,"datePublished":"2020-04-03"}],"title":{"ja":"薬剤関連顎骨壊死における口腔内微生物叢メタゲノム解析","en":"Shotgun metagenome analysis of oral microbiome in MRONJ and healthy individuals"},"summary":{"aims":{"ja":"ロングリードデータにより、口腔内細菌叢・ファージ叢に関する理解がどれだけ深まるかを検討する","en":"To reveal to what extent long-read data of PromethION deeps our understanding of oral microbiome and virome"},"methods":{"ja":"保存キット（OMNIgeneORAL OM-501）で保存された唾液から酵素法にて抽出したbulk DNAを用いたPromethION（1フローセルにつき1サンプル）によるショットガンメタゲノム解読","en":"Shutgun metagenome sequencing of bulk DNA extracted from saliva stored in OMNIgeneORAL OM-501 using a enzymatic method"},"targets":{"ja":"日本人集団の唾液","en":"Saliva of Japanese healthy individuals"},"url":{"ja":null,"en":null}},"listingSummary":{"methods":{"ja":"メタゲノム","en":"Metagenome"},"targets":{"ja":"健常者：4名\n（日本人）","en":"4 healthy individuals\n(Japanese)"},"typeOfData":{"ja":"メタゲノム","en":"Metagenome"}},"releaseNote":{"ja":"健常人4名の唾液からDNAを抽出し、PromethIONによるロングリードシークエンスを行った。配列データ（fastq）と得られたリードの詳細情報（txt）を提供する（JGAD000268）。併せて、ヒト配列を除去したメタゲノム配列情報を非制限公開データとして提供する（DRA009794）。","en":"A long-read metagenome sequencing of bulk DNA extracted from saliva was performed by using of PromethION. Fastq files and sequencing summary data (txt) are provided (JGAD000268). Additionally, metagenome sequence data without human sequence are also provided as an unrestricted-access data (DRA009794)."},"dataProviders":[{"name":{"ja":"矢原 耕史","en":"Koji Yahara"},"organization":{"name":{"ja":"国立感染症研究所・薬剤耐性研究センター","en":"Antimicrobial Resistance Research Center, National Institute of Infectious Diseases"}}}],"researchProjects":[{"name":{"ja":"新学術領域「ネオウイルス学」","en":"Neo-virology"},"url":{"ja":[{"url":"http://neo-virology.org/","text":"http://neo-virology.org/"}],"en":[{"url":"http://neo-virology.org/en/","text":"http://neo-virology.org/en/"}]}}],"grants":[{"title":{"ja":"拡張viromeデータと長鎖シーケンサーを用いたファージと宿主のビッグデータ解析","en":"Big data analysis of bacteriophages and host bacterial using the extended virome datasets and long-read sequencer"},"agency":{"ja":"科学研究費助成事業 新学術領域研究","en":"KAKENHI Grant-in-Aid for Scientific Research on Innovative Areas"},"grantIds":["19H04846"]}],"relatedPublications":[{"title":"Long-read metagenomics using PromethION uncovers novel oral bacteriophages, their abundance, and interaction with host bacteria","doi":"https://doi.org/10.1038/s41467-020-20199-9","datasets":["JGAD000268","DRA009794"]}],"datasets":["JGAD000268","DRA009794"],"controlledAccessUsers":[]}