{"id":"NHA000178","research":"hum0197","url":"https://humandbs.dbcls.jp/dataset/NHA000178","datePublished":"2022-12-01","dateModified":"2022-12-01","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"unrestricted-access","label":{"ja":"非制限公開","en":"Unrestricted-access"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"微生物ゲノムのMAG・ウイルスのゲノム配列・CRISPR spacer配列","en":"MAG, Viral genome and CRISPR spacers of Microbial genome"}}],"experiments":[{"label":"Metagenomics","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"日本人腸内微生物ゲノム\nJGAS000205/JGAS000260/JGAS000316/JGAS000415/JGAS000530/JGAS000531、公開データ（DRA006684）より取得","en":"Japanese gut microbiome\nJGAS000205 / JGAS000260 / JGAS000316 / JGAS000415 / JGAS000530 / JGAS000531, Public data (DRA006684)"}},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"JGAS000205/JGAS000260/JGAS000316/JGAS000415/JGAS000530/JGAS000531、DRA006684より取得した配列","en":"JGAS000205 / JGAS000260 / JGAS000316 / JGAS000415 / JGAS000530 / JGAS000531, DRA006684"}},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"metagenomics","label":{"en":"Metagenomics"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-hiseq-2500","label":{"en":"Illumina HiSeq 2500"}},{"code":"illumina-hiseq-3000","label":{"en":"Illumina HiSeq 3000"}},{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"metaspades,dastools(metabat2、maxbin2、concoct)によるde novo assembly + binning","en":"De novo assembly with metaspades was performed. Then, binning with dastools (metabat2, maxbin2, concoct) was applied."}},{"key":"processed-data-type","label":{"ja":"加工データの種類","en":"Processed data type"},"type":"vocabulary","terms":[{"code":"mag","label":{"ja":"メタゲノムから再構成したゲノム (MAG)","en":"MAG"}}]},{"key":"insdc-sequence-accession","label":{"ja":"INSDC配列 Accession","en":"INSDC Sequence Accession"},"type":"text","text":{"ja":"JGA MAG：20220531NSUB000031HIGH_JGA_JMAG_GENOME_*.acclist（JGAS000205/JGAS000260/JGAS000316/JGAS000415/JGAS000530/JGAS000531）\nTPA MAG： EMNX01000001-EMNX01000025、EMNY01000001-EMNY01000068、EMNZ01000001-EMNZ01000149、EMOA01000001-EMOA01000067（DRA006684）","en":"JGA MAG: 20220531NSUB000031HIGH_JGA_JMAG_GENOME_*.acclist.txt\nTPA MAG: EMNX01000001-EMNX01000025, EMNY01000001-EMNY01000068, EMNZ01000001-EMNZ01000149, EMOA01000001-EMOA01000067"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"fileFormats":[]}