{"id":"NHA000131","research":"hum0196","url":"https://humandbs.dbcls.jp/dataset/NHA000131","datePublished":"2019-12-20","dateModified":"2019-12-20","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"unrestricted-access","label":{"ja":"非制限公開","en":"Unrestricted-access"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"自殺者と非自殺者、および自殺時の年齢についてのGWASメタ解析","en":"meta-analyses of GWAS datasets for suicides vs. non-suicide individuals and for age at suicide"}}],"experiments":[{"label":"Genotyping by array","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"【自殺者 （ICD10：X83） vs. 非自殺者】\n1st set：自殺者 386例、非自殺対照 7,458例\n2nd set：自殺者 360例、非自殺対照 6,591例\n計：自殺者 746例、非自殺対照 14,049例\n【自殺時の年齢】\n1st set：自殺者 366例、2nd set：自殺者 353例\n計：自殺者 719例","en":"[Suicide (ICD10: X83) vs. Non-suicide]\n1st set: Suicide: 386 cases, Non-suicide: 7,458 cases\n2nd set: Suicide: 360 cases, Non-suicide: 6,591 cases\nTotal: Suicide: 746 cases, Non-suicide: 14,049 cases\n[Age at Suicide]\n1st set: Suicide: 366 cases, 2nd set: Suicide: 353 cases\nTotal: Suicide: 719 cases"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"X83","label":{"ja":"その他の明示された手段による故意の自傷及び自殺","en":"Intentional self-harm by other specified means"}}],"name":{"ja":"自殺者","en":"Suicide"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":14795,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"死後組織・末梢血から抽出したgDNA","en":"gDNAs extracted from postmortem tissues or peripheral blood cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"genotyping-by-array","label":{"en":"Genotyping by array"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"humanomniexpress-beadchip-kit","label":{"en":"HumanOmniExpress BeadChip Kit"}},{"code":"humanomniexpressexome-beadchip-kit","label":{"en":"HumanOmniExpressExome BeadChip Kit"}}]},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-humanomniexpress","label":{"en":"Illumina HumanOmniExpress"}},{"code":"illumina-humanomniexpressexome","label":{"en":"Illumina HumanOmniExpressExome"}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch37","label":{"en":"GRCh37"}}]},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"以下のクライテリアに該当するvariantを除外\n・sample call rate < 0.98, SNV call rate < 0.98, MAF < 0.01\n・対照者群で HWE P < 1 x 10⁻⁶\n・1st set、2nd setそれぞれにおいて、Imputation quality (Rsq) < 0.7","en":"Variants which match the following criteria were excluded:\n- sample call rate < 0.98, SNV call rate < 0.98, MAF < 0.01,\n- HWE P < 1 x 10⁻⁶ in control\n- imputation quality of Rsq < 0.7 in each of the 1st and 2nd dataset"}},{"key":"imputation","label":{"ja":"インピュテーション","en":"Imputation"},"type":"text","text":{"ja":"minimac [imputation (1000 genomes Phase 3)]","en":"minimac [imputation (1000 genomes Phase 3)]"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"GenCall software (GenomeStudio)","en":"GenCall software (GenomeStudio)"}},{"key":"variant-number","label":{"ja":"バリアント数","en":"Variant count"},"type":"number","numbers":[{"value":8381404,"unit":null,"high":null,"suffix":{"ja":" SNPs (【自殺者 vs. 非自殺者】)","en":" SNPs ([Suicide vs. non-suicide])"}},{"value":8555734,"unit":null,"high":null,"suffix":{"ja":" SNPs (【自殺時の年齢】)","en":" SNPs ([Age at time of suicide])"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"fileFormats":[{"code":"docx","label":{"en":"DOCX"}},{"code":"zip","label":{"en":"ZIP"}}]}