{"id":"NHA000074","research":"hum0074","url":"https://humandbs.dbcls.jp/dataset/NHA000074","datePublished":"2018-09-25","dateModified":"2018-09-25","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"unrestricted-access","label":{"ja":"非制限公開","en":"Unrestricted-access"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"SVR後肝がん発症 123症例および\n肝がんを発症していない 333症例のGWAS","en":"GWAS for HCC development after eradication of HCV by IFN-based treatment\n123 patients who developed HCC\n333 patients who did not develop HCC"}}],"experiments":[{"label":"Genotyping by array","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"インターフェロン治療によるC型肝炎ウイルス排除（SVR）後の肝発がん（ICD10：C220）\n治療終了後1年以上経過して肝がんを発症した群：123症例\n治療終了後5年以上経過して肝がんを発症していない群：333症例","en":"HCC development after eradication of HCV by IFN-based treatment (ICD10: C220)\n123 patients who developed HCC\n333 patients who did not develop HCC"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C220","label":{"ja":"肝細胞癌","en":"Malignant neoplasm: Liver cell carcinoma"}}],"name":{"ja":"インターフェロン治療によるC型肝炎ウイルス排除（SVR）後の肝発がん","en":"HCC development after eradication of HCV by IFN-based treatment"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":456,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"末梢血から抽出したgDNA","en":"gDNA extracted from peripheral blood cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"genotyping-by-array","label":{"en":"Genotyping by array"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"axiom-2-0-reagent-kit","label":{"en":"Axiom 2.0 Reagent Kit"}}]},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"affymetrix-axiom-genome-wide-asi-1-array","label":{"en":"Affymetrix Axiom Genome-Wide ASI 1 Array"}},{"code":"digitag2-assay","label":{"en":"DigiTag2 assay"}},{"code":"taqman-snp-genotyping-assays","label":{"en":"TaqMan SNP Genotyping Assays"}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"ncbi36","label":{"en":"NCBI36"}}]},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"Sample call rate < 0.95、SNP call rate < 0.95、MAF < 0.05、\nHWE P < 0.001、Chi-square test (allelic model) P < 1 x 10^-4","en":"Sample call rate < 0.95, SNP call rate < 0.95, MAF < 0.05,\nHWE P < 0.001, Chi-square test (allelic model) P < 1 x 10^-4"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Genotyping Console v4.1","en":"Genotyping Console v4.1"}},{"key":"variant-number","label":{"ja":"バリアント数","en":"Variant count"},"type":"number","numbers":[{"value":70,"unit":null,"high":null,"suffix":{"ja":" SNPs","en":" SNPs"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"fileFormats":[{"code":"xlsx","label":{"en":"XLSX"}}]}