{"id":"NHA000067","research":"hum0056","url":"https://humandbs.dbcls.jp/dataset/NHA000067","datePublished":"2018-03-30","dateModified":"2018-03-30","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"unrestricted-access","label":{"ja":"非制限公開","en":"Unrestricted-access"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"（1）SNPsのアリル頻度情報（WGS）","en":"(1) Allele frequencies from WGS"}}],"experiments":[{"label":"WGS","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"IMMの地域住民コホート：197名","en":"IMM cohort: 197 individuals"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":197,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"102名の単球、102名のCD4陽性Tリンパ球、94名の好中球より抽出したDNA","en":"DNAs extracted from 102 monocytes, 102 CD4+ T cells, and 94 neutrophils"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"monocyte","label":{"ja":"単球","en":"Monocyte"}},{"code":"cd4-t-cell","label":{"ja":"CD4 陽性 T 細胞","en":"CD4+ T cell"}},{"code":"neutrophil","label":{"ja":"好中球","en":"Neutrophil"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wgs","label":{"en":"WGS"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"truseq-dna-pcr-free-library-prep-kit","label":{"en":"TruSeq DNA PCR-Free Library Prep Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"超音波断片化（Covaris LE220）","en":"Ultrasonic fragmentation (Covaris LE220)"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-hiseq-2500","label":{"en":"Illumina HiSeq 2500"}},{"code":"illumina-hiseq-x","label":{"en":"Illumina HiSeq X"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read 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filtering"},"type":"text","text":{"ja":"qMiSeq*1","en":"qMiSeq*1"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Bcftools software（ver. 0.1.17-dev）","en":"Bcftools software (ver. 0.1.17-dev)"}},{"key":"read-count","label":{"ja":"リード数","en":"Read count"},"type":"text","text":{"ja":"230,956,735,490 / 228,318,012,630\n（単球：58,859,522,366 / 57,737,359,722）\n（CD4陽性Tリンパ球：58,964,563,094 / 57,845,976,317）\n（好中球：113,132,650,030 / 112,734,676,591）\n※マップされたリード数：複数マップの候補がある場合にはランダムに1か所にアライメントしている。","en":"230,956,735,490 / 228,318,012,630\n(Monocytes: 58,859,522,366 / 57,737,359,722)\n(CD4+ T cells: 58,964,563,094 / 57,845,976,317)\n(neutrophils: 113,132,650,030 / 112,734,676,591)\n*mapped reads: a read which had multiple mapped locations was aligned to one site randomly."}},{"key":"coverage-depth","label":{"ja":"カバレッジ (深度)","en":"Coverage (depth)"},"type":"number","numbers":[{"value":40.9,"unit":"x","high":null}]},{"key":"variant-number","label":{"ja":"バリアント数","en":"Variant count"},"type":"number","numbers":[{"value":8129415,"unit":null,"high":null,"prefix":{"ja":"単球: ","en":"Monocytes: "},"suffix":{"ja":" SNPs","en":" SNPs"}},{"value":8137443,"unit":null,"high":null,"prefix":{"ja":"CD4陽性Tリンパ球: ","en":"CD4-positive T lymphocytes: "},"suffix":{"ja":" SNPs","en":" SNPs"}},{"value":8175808,"unit":null,"high":null,"prefix":{"ja":"好中球: ","en":"Neutrophils: "},"suffix":{"ja":" SNPs","en":" SNPs"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"fileFormats":[{"code":"xlsx","label":{"en":"XLSX"}},{"code":"zip","label":{"en":"ZIP"}}]}