{"id":"NHA000048","research":"hum0042","url":"https://humandbs.dbcls.jp/dataset/NHA000048","datePublished":"2016-03-02","dateModified":"2016-03-02","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"TMJ（日本人105症例、韓国人41症例）および\nnon-TMJ（日本人193名、韓国人181名）のGWAS","en":"GWAS in TMJ (105 Japanese cases, 41 Korean cases) and\nnon-TMJ (193 Japanese controls, 181 Korean controls)"}}],"experiments":[{"label":"Genotyping by array (GWAS)","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"1．TMJ\nTMJ：146症例（日本人105症例、韓国人41症例）\nnon-TMJ：374名（日本人193名、韓国人181名）\n2．第三大臼歯先天性欠如\n2-1．下顎に一本以上の第三大臼歯先天性欠如\n有（日本人40症例、韓国人40症例）\n無（日本人224名、韓国人183名）\n2-2．上顎に一本以上の第三大臼歯先天性欠如\n有（日本人62症例、韓国人63症例）\n無（日本人202名、韓国人160名）\n2-3．上下何れかに一本以上の第三大臼歯先天性欠如\n有（日本人78症例、韓国人71症例）\n無（日本人186名、韓国人152名）","en":"(1) TMJ\nTMJ: 146 cases (105 Japanese cases, 41 Korean cases)\nnon-TMJ: 374 controls (193 Japanese controls, 181 Korean controls)\n(2) third molar agenesis\n(2-1) mandibular third molar agenesis\nwith third molar agenesis (40 Japanese cases, 40 Korean cases)\nwithout third molar agenesis (224 Japanese controls, 183 Korean controls)\n(2-2) maxillary third molar agenesis\nwith third molar agenesis (62 Japanese cases, 63 Korean cases)\nwithout third molar agenesis (202 Japanese controls, 160 Korean controls)\n(2-3) at least one-third molar agenesis\nwith third molar agenesis (78 Japanese cases, 71 Korean cases)\nwithout third molar agenesis (186 Japanese controls, 152 Korean controls)"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":520,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}},{"code":"korean","label":{"ja":"韓国人","en":"Korean"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"唾液より抽出されたDNA","en":"gDNAs extracted from saliva"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"saliva","label":{"ja":"唾液","en":"Saliva"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"genotyping-by-array","label":{"en":"Genotyping by array"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"humanomniexpress-beadchip-kit","label":{"en":"HumanOmniExpress BeadChip Kit"}}]},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-humanomniexpress","label":{"en":"Illumina HumanOmniExpress"}}]},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"Sample Call rate ≤ 0.98, SNP call rate ≤ 0.98, MAF < 3%, HWE P < 1 x 10^-6","en":"Sample Call rate ≤ 0.98, SNP call rate ≤ 0.98, MAF ≤ 3%, HWE P < 1 x 10^-6"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"GenCall software（GenomeStudio）","en":"GenCall software (GenomeStudio)"}},{"key":"variant-number","label":{"ja":"バリアント数","en":"Variant count"},"type":"number","numbers":[{"value":550005,"unit":null,"high":null,"prefix":{"ja":"日本人: ","en":"Japanese: "},"suffix":{"ja":" SNPs","en":" SNPs"}},{"value":545797,"unit":null,"high":null,"prefix":{"ja":"韓国人: ","en":"Korean: "},"suffix":{"ja":" SNPs","en":" SNPs"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"fileFormats":[{"code":"xlsx","label":{"en":"XLSX"}}]}