{"id":"JGAD001119","secondaryIds":[],"research":"hum0608","url":"https://humandbs.dbcls.jp/dataset/JGAD001119","datePublished":null,"dateModified":null,"values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（RNA-seq）","en":"NGS (RNA-seq)"}}],"experiments":[{"label":{"ja":"RNA-seq","en":"RNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"皮膚悪性黒色腫（ICD10：C43）：55症例\n腫瘍組織（FFPE標本）：55検体\n- 爪部悪性黒色腫：43症例\n（早期22症例、進行期21症例）\n- 非爪部悪性黒色腫：12症例\n（進行期 AJCC病期IIB以上、足底型6症例、非末端皮膚型6症例）","en":"cutaneous melanoma (ICD10: C43): 55 cases\ntumor tissues (FFPE specimens):  55 samples\n- nail unit melanoma: 43 cases  (22 early-stage, 21 late-stage)\n- non-nail melanoma: 12 cases (6 plantar acral and 6 non-acral at late-stage (AJCC stage IIB or higher))"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C43","label":{"ja":"皮膚の悪性黒色腫","en":"Malignant melanoma of skin"}}],"name":{"ja":"皮膚悪性黒色腫","en":"cutaneous melanoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":55,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織より抽出したRNA","en":"RNAs extracted from tumor tissues"}},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"smart-seq-stranded-kit","label":{"en":"SMART-Seq Stranded Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":null,"en":null}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}},{"code":"illumina-novaseq-x-plus","label":{"en":"Illumina NovaSeq X Plus"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"no-use-by-private-sector-companies-jgap000003","label":{"ja":"民間企業による利用禁止 (JGAP000003)","en":"No use by private-sector companies (JGAP000003)"}},{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"fileFormats":[]}