{"id":"JGAD001065","research":"hum0210","url":"https://humandbs.dbcls.jp/dataset/JGAD001065","datePublished":"2026-08-03","dateModified":"2026-08-03","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（RNA-seq）","en":"NGS (RNA-seq)"}}],"experiments":[{"label":"RNA-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"成人T細胞白血病リンパ腫（ICD10：C91.5）：5症例\nPDX 5モデルから採取した腫瘍細胞（1症例から1モデルずつ作製）：計30検体\nvehicle群：3検体ずつ\nMALT1阻害薬CRD-1441551投与群：3検体ずつ","en":"adult T-cell leukemia/lymphoma (ICD10: C91.5): 5 cases\ntumour cells harvested from 5 ATL PDX models (one model per patient): 30 samples in total\n- vehicle: 3 samples each\n- MALT1 inhibitor CRD-1441551-treated: 3 samples each"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C915","label":{"ja":"成人T細胞リンパ腫／白血病［HTLV-1関連］","en":"Adult T-cell lymphoma/leukaemia [HTLV-1-associated]"}}],"name":{"ja":"成人T細胞白血病リンパ腫","en":"adult T-cell leukemia/lymphoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":5,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"PDX腫瘍細胞より抽出したRNA","en":"RNAs extracted from tumour cells harvested from PDX models"}},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"nebnext-ultra-rna-library-prep-kit-for-illumina","label":{"en":"NEBNext Ultra RNA Library Prep Kit for Illumina"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"上記キットに準拠（化学反応、熱処理）","en":"included in the above library construction kit (chemical reaction, heat treatment)"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch37","label":{"en":"GRCh37"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"STAR（v2.5.3a）","en":"STAR (v2.5.3a)"}},{"key":"mapping-quality","label":{"ja":"マッピング品質","en":"Mapping quality"},"type":"text","text":{"ja":"PDX由来リードから Xenome を用いてマウス由来と判定されたリードを除去し、ヒト由来と判定されたリードのみを抽出。マッピング後は、過剰なミスマッチ・多重マッピング・十分なアラインメント長を満たさないリードを除外した（mapped-only、unmapped 非含有）。","en":"Mouse-derived reads were removed from the PDX reads using Xenome, and only reads identified as human-derived were retained. The retained reads were aligned to UCSC hg19 with STAR (v2.5.3a) using default settings; default alignment filters removed reads with excessive mismatches, excessive multi-mapping, or insufficient aligned length. Only mapped reads are included (unmapped reads excluded)."}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":64840475705,"fileFormats":[{"code":"bam","label":{"en":"BAM"}}]}