{"id":"JGAD001006","research":"hum0548","url":"https://humandbs.dbcls.jp/dataset/JGAD001006","datePublished":"2026-02-05","dateModified":"2026-02-05","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（Target Capture、RNA-seq）","en":"NGS (Target Capture, RNA-seq)"}}],"experiments":[{"label":"Targeted DNA sequencing + RNA-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"成人固形がん（ICD10：C162、C169、C163、C160、C158、C161、C221、C251、C254、C220、C253、C250、D377、C240、C252、C787、C182、D137、C480、C788、C19、C170、C20、C23、C241、D376、D372、C171、J690、C187、C258、C64、C259、C248、C060、C029、C030、C031、C439、D480、C049、C062、C310、D370、C091、C050、C081、C080、D165、C151、C150、C159、C155、C153、C152、C12、C021、C040、C312、C01、C131、C73、C321、C300、C07、C041、D385、C311、D355、C490、C020、C102、C320、H618、C186、C189、C184、C180、C211、C181、C504、C505、C509、C500、C502、C503、C569、C501、D486、C508、C341、C343、C450、D487、C349、C342、C80、C33、D383、C629、C66、C675、D401、D350、C61、C541、C539、C56、C549、C482、C542、C530）：1,996症例\n腫瘍組織（病理組織検体、通常診療の診断時の生検、細胞診サンプルのFFPE検体）：1,996検体","en":"adult solid tumor (ICD10: C162, C169, C163, C160, C158, C161, C221, C251, C254, C220, C253, C250, D377, C240, C252, C787, C182, D137, C480, C788, C19, C170, C20, C23, C241, D376, D372, C171, J690, C187, C258, C64, C259, C248, C060, C029, C030, C031, C439, D480, C049, C062, C310, D370, C091, C050, C081, C080, D165, C151, C150, C159, C155, C153, C152, C12, C021, C040, C312, C01, C131, C73, C321, C300, C07, C041, D385, C311, D355, C490, C020, C102, C320, H618, C186, C189, C184, C180, C211, C181, C504, C505, C509, C500, C502, C503, C569, C501, D486, C508, C341, C343, C450, D487, C349, C342, C80, C33, D383, C629, C66, C675, D401, D350, C61, C541, C539, C56, C549, C482, C542, C530): 1,996 cases\ntumor tissues (FFPE samples): 1,996 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C162","label":{"ja":"胃体部","en":"Malignant neoplasm: Body of stomach"}},{"code":"C169","label":{"ja":"胃，部位不明","en":"Malignant neoplasm: Stomach, unspecified"}},{"code":"C163","label":{"ja":"幽門前庭","en":"Malignant neoplasm: Pyloric antrum"}},{"code":"C160","label":{"ja":"噴門","en":"Malignant neoplasm: Cardia"}},{"code":"C158","label":{"ja":"食道の境界部病巣","en":"Malignant neoplasm: Overlapping lesion of oesophagus"}},{"code":"C161","label":{"ja":"胃底部","en":"Malignant neoplasm: Fundus of stomach"}},{"code":"C221","label":{"ja":"肝内胆管癌","en":"Malignant neoplasm: Intrahepatic bile duct carcinoma"}},{"code":"C251","label":{"ja":"膵体部","en":"Malignant neoplasm: Body of pancreas"}},{"code":"C254","label":{"ja":"内分泌膵","en":"Malignant neoplasm: Endocrine pancreas"}},{"code":"C220","label":{"ja":"肝細胞癌","en":"Malignant neoplasm: Liver cell carcinoma"}},{"code":"C253","label":{"ja":"膵管","en":"Malignant neoplasm: Pancreatic duct"}},{"code":"C250","label":{"ja":"膵頭部","en":"Malignant neoplasm: Head of pancreas"}},{"code":"D377","label":{"ja":"その他の消化器","en":"Neoplasm of uncertain or unknown behaviour: Other digestive organs"}},{"code":"C240","label":{"ja":"肝外胆管","en":"Malignant neoplasm: Extrahepatic bile duct"}},{"code":"C252","label":{"ja":"膵尾部","en":"Malignant neoplasm: Tail of pancreas"}},{"code":"C787","label":{"ja":"肝及び肝内胆管の続発性悪性新生物＜腫瘍＞","en":"Secondary malignant neoplasm of liver and intrahepatic bile duct"}},{"code":"C182","label":{"ja":"上行結腸","en":"Malignant neoplasm: Ascending colon"}},{"code":"D137","label":{"ja":"内分泌膵","en":"Benign neoplasm: Endocrine pancreas"}},{"code":"C480","label":{"ja":"後腹膜","en":"Malignant neoplasm: Retroperitoneum"}},{"code":"C788","label":{"ja":"その他及び部位不明の消化器の続発性悪性新生物＜腫瘍＞","en":"Secondary malignant neoplasm of other and unspecified digestive organs"}},{"code":"C19","label":{"ja":"直腸S状結腸移行部の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of rectosigmoid junction"}},{"code":"C170","label":{"ja":"十二指腸","en":"Malignant neoplasm: Duodenum"}},{"code":"C20","label":{"ja":"直腸の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of rectum"}},{"code":"C23","label":{"ja":"胆のう＜嚢＞の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of gallbladder"}},{"code":"C241","label":{"ja":"ファーター＜Vater＞乳頭膨大部","en":"Malignant neoplasm: Ampulla of Vater"}},{"code":"D376","label":{"ja":"肝，胆のう＜嚢＞及び胆管","en":"Neoplasm of uncertain or unknown behaviour: Liver, gallbladder and bile ducts"}},{"code":"D372","label":{"ja":"小腸","en":"Neoplasm of uncertain or unknown behaviour: Small intestine"}},{"code":"C171","label":{"ja":"空腸","en":"Malignant neoplasm: Jejunum"}},{"code":"J690","label":{"ja":"食物及び吐物による肺臓炎","en":"Pneumonitis due to food and vomit"}},{"code":"C187","label":{"ja":"S状結腸","en":"Malignant neoplasm: Sigmoid colon"}},{"code":"C258","label":{"ja":"膵の境界部病巣","en":"Malignant neoplasm: Overlapping lesion of pancreas"}},{"code":"C64","label":{"ja":"腎盂を除く腎の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of kidney, except renal pelvis"}},{"code":"C259","label":{"ja":"膵，部位不明","en":"Malignant neoplasm: Pancreas, unspecified"}},{"code":"C248","label":{"ja":"胆道の境界部病巣","en":"Malignant neoplasm: Overlapping lesion of biliary tract"}},{"code":"C060","label":{"ja":"頬粘膜","en":"Malignant neoplasm: Cheek mucosa"}},{"code":"C029","label":{"ja":"舌，部位不明","en":"Malignant neoplasm: Tongue, unspecified"}},{"code":"C030","label":{"ja":"上顎歯肉","en":"Malignant neoplasm: Upper gum"}},{"code":"C031","label":{"ja":"下顎歯肉","en":"Malignant neoplasm: Lower gum"}},{"code":"C439","label":{"ja":"皮膚の悪性黒色腫，部位不明","en":"Malignant neoplasm: Malignant melanoma of skin, unspecified"}},{"code":"D480","label":{"ja":"骨及び関節軟骨","en":"Neoplasm of uncertain or unknown behaviour: Bone and articular cartilage"}},{"code":"C049","label":{"ja":"口（腔）底，部位不明","en":"Malignant neoplasm: Floor of mouth, unspecified"}},{"code":"C062","label":{"ja":"臼後部","en":"Malignant neoplasm: Retromolar area"}},{"code":"C310","label":{"ja":"上顎洞","en":"Malignant neoplasm: Maxillary sinus"}},{"code":"D370","label":{"ja":"口唇，口腔及び咽頭","en":"Neoplasm of uncertain or unknown behaviour: Lip, oral cavity and pharynx"}},{"code":"C091","label":{"ja":"扁桃口蓋弓（前）（後）","en":"Malignant neoplasm: Tonsillar pillar (anterior)(posterior)"}},{"code":"C050","label":{"ja":"硬口蓋","en":"Malignant neoplasm: Hard palate"}},{"code":"C081","label":{"ja":"舌下腺","en":"Malignant neoplasm: Sublingual gland"}},{"code":"C080","label":{"ja":"顎下腺","en":"Malignant neoplasm: Submandibular gland"}},{"code":"D165","label":{"ja":"下顎骨","en":"Benign neoplasm: Lower jaw bone"}},{"code":"C151","label":{"ja":"胸部食道","en":"Malignant neoplasm: Thoracic part of oesophagus"}},{"code":"C150","label":{"ja":"頚部食道","en":"Malignant neoplasm: Cervical part of oesophagus"}},{"code":"C159","label":{"ja":"食道，部位不明","en":"Malignant neoplasm: Oesophagus, unspecified"}},{"code":"C155","label":{"ja":"下部食道","en":"Malignant neoplasm: Lower third of oesophagus"}},{"code":"C153","label":{"ja":"上部食道","en":"Malignant neoplasm: Upper third of oesophagus"}},{"code":"C152","label":{"ja":"腹部食道","en":"Malignant neoplasm: Abdominal part of oesophagus"}},{"code":"C12","label":{"ja":"梨状陥凹＜洞＞の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of piriform sinus"}},{"code":"C021","label":{"ja":"舌縁","en":"Malignant neoplasm: Border of tongue"}},{"code":"C040","label":{"ja":"前部口（腔）底","en":"Malignant neoplasm: Anterior floor of mouth"}},{"code":"C312","label":{"ja":"前頭洞","en":"Malignant neoplasm: Frontal sinus"}},{"code":"C01","label":{"ja":"舌根＜基底＞部の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of base of tongue"}},{"code":"C131","label":{"ja":"披裂喉頭蓋ひだ，下咽頭面","en":"Malignant neoplasm: Aryepiglottic fold, hypopharyngeal aspect"}},{"code":"C73","label":{"ja":"甲状腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of thyroid gland"}},{"code":"C321","label":{"ja":"声門上部","en":"Malignant neoplasm: Supraglottis"}},{"code":"C300","label":{"ja":"鼻腔","en":"Malignant neoplasm: Nasal cavity"}},{"code":"C07","label":{"ja":"耳下腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of parotid gland"}},{"code":"C041","label":{"ja":"側部口（腔）底","en":"Malignant neoplasm: Lateral floor of mouth"}},{"code":"D385","label":{"ja":"その他の呼吸器","en":"Neoplasm of uncertain or unknown behaviour: Other respiratory organs"}},{"code":"C311","label":{"ja":"篩骨洞","en":"Malignant neoplasm: Ethmoidal sinus"}},{"code":"D355","label":{"ja":"頚動脈小体","en":"Benign neoplasm: Carotid body"}},{"code":"C490","label":{"ja":"頭部，顔面及び頚部の結合組織及び軟部組織","en":"Malignant neoplasm: Connective and soft tissue of head, face and neck"}},{"code":"C020","label":{"ja":"舌背面","en":"Malignant neoplasm: Dorsal surface of tongue"}},{"code":"C102","label":{"ja":"中咽頭側壁","en":"Malignant neoplasm: Lateral wall of oropharynx"}},{"code":"C320","label":{"ja":"声門","en":"Malignant neoplasm: Glottis"}},{"code":"H618","label":{"ja":"その他の明示された外耳障害","en":"Other specified disorders of external ear"}},{"code":"C186","label":{"ja":"下行結腸","en":"Malignant neoplasm: Descending colon"}},{"code":"C189","label":{"ja":"結腸，部位不明","en":"Malignant neoplasm: Colon, unspecified"}},{"code":"C184","label":{"ja":"横行結腸","en":"Malignant neoplasm: Transverse colon"}},{"code":"C180","label":{"ja":"盲腸","en":"Malignant neoplasm: Caecum"}},{"code":"C211","label":{"ja":"肛門管","en":"Malignant neoplasm: Anal canal"}},{"code":"C181","label":{"ja":"虫垂","en":"Malignant neoplasm: Appendix"}},{"code":"C504","label":{"ja":"乳房上外側４分の１","en":"Malignant neoplasm: Upper-outer quadrant of breast"}},{"code":"C505","label":{"ja":"乳房下外側４分の１","en":"Malignant neoplasm: Lower-outer quadrant of breast"}},{"code":"C509","label":{"ja":"乳房，部位不明","en":"Malignant neoplasm: Breast, unspecified"}},{"code":"C500","label":{"ja":"乳頭部及び乳輪","en":"Malignant neoplasm: Nipple and areola"}},{"code":"C502","label":{"ja":"乳房上内側４分の１","en":"Malignant neoplasm: Upper-inner quadrant of breast"}},{"code":"C503","label":{"ja":"乳房下内側４分の１","en":"Malignant neoplasm: Lower-inner quadrant of breast"}},{"code":"C56","label":{"ja":"卵巣の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of ovary"}},{"code":"C501","label":{"ja":"乳房中央部","en":"Malignant neoplasm: Central portion of breast"}},{"code":"D486","label":{"ja":"乳房","en":"Neoplasm of uncertain or unknown behaviour: Breast"}},{"code":"C508","label":{"ja":"乳房の境界部病巣","en":"Malignant neoplasm: Overlapping lesion of breast"}},{"code":"C341","label":{"ja":"上葉，気管支又は肺","en":"Malignant neoplasm: Upper lobe, bronchus or lung"}},{"code":"C343","label":{"ja":"下葉，気管支又は肺","en":"Malignant neoplasm: Lower lobe, bronchus or lung"}},{"code":"C450","label":{"ja":"胸膜中皮腫","en":"Mesothelioma of pleura"}},{"code":"D487","label":{"ja":"その他の明示された部位","en":"Neoplasm of uncertain or unknown behaviour: Other specified sites"}},{"code":"C349","label":{"ja":"気管支又は肺，部位不明","en":"Malignant neoplasm: Bronchus or lung, unspecified"}},{"code":"C342","label":{"ja":"中葉，気管支又は肺","en":"Malignant neoplasm: Middle lobe, bronchus or lung"}},{"code":"C80","label":{"ja":"悪性新生物＜腫瘍＞，部位が明示されていないもの","en":"Malignant neoplasm, without specification of site"}},{"code":"C33","label":{"ja":"気管の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of trachea"}},{"code":"D383","label":{"ja":"縦隔","en":"Neoplasm of uncertain or unknown behaviour: Mediastinum"}},{"code":"C629","label":{"ja":"精巣＜睾丸＞，部位不明","en":"Malignant neoplasm: Testis, unspecified"}},{"code":"C66","label":{"ja":"尿管の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of ureter"}},{"code":"C675","label":{"ja":"膀胱頚部","en":"Malignant neoplasm: Bladder neck"}},{"code":"D401","label":{"ja":"精巣＜睾丸＞","en":"Neoplasm of uncertain or unknown behaviour: Testis"}},{"code":"D350","label":{"ja":"副腎","en":"Benign neoplasm: Adrenal gland"}},{"code":"C61","label":{"ja":"前立腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of prostate"}},{"code":"C541","label":{"ja":"子宮内膜","en":"Malignant neoplasm: Endometrium"}},{"code":"C539","label":{"ja":"子宮頚（部），部位不明","en":"Malignant neoplasm: Cervix uteri, unspecified"}},{"code":"C549","label":{"ja":"子宮体部，部位不明","en":"Malignant neoplasm: Corpus uteri, unspecified"}},{"code":"C482","label":{"ja":"腹膜，部位不明","en":"Malignant neoplasm: Peritoneum, unspecified"}},{"code":"C542","label":{"ja":"子宮筋層","en":"Malignant neoplasm: Myometrium"}},{"code":"C530","label":{"ja":"子宮頚内膜＜endocervix＞","en":"Malignant neoplasm: Endocervix"}}],"name":{"ja":"成人固形がん","en":"adult solid tumor"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":1996,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"adult","label":{"ja":"成人","en":"Adult"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織より抽出したDNAおよびRNA","en":"DNAs/RNAs extracted from tumor tissues"}},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"targeted-dna-sequencing","label":{"en":"Targeted DNA sequencing"}},{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":"ACTOnco Comprehensive 440-Gene Cancer Panel（440遺伝子＋31融合遺伝子）","en":"ACTOnco Comprehensive 440-Gene Cancer Panel (440 genes + 31 fusion genes)"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"ion-ampliseq-library-kit","label":{"en":"Ion AmpliSeq Library Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"Amplicon PCR","en":"Amplicon PCR"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"thermo-fisher-scientific-ion-proton","label":{"en":"Thermo Fisher Scientific Ion Proton"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"single-end","label":{"ja":"シングルエンド","en":"Single-end"}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch37","label":{"en":"GRCh37"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"【DNA】Ion Torrent Suite\n【RNA】ACT SOP に準拠","en":"[DNA] Ion Torrent Suite\n[RNA] ACT SOP protocol"}},{"key":"mapping-quality","label":{"ja":"マッピング品質","en":"Mapping quality"},"type":"text","text":{"ja":"【DNA】変異レベルでカバレッジフィルタ適用\n【RNA】ACT SOP に準拠","en":"[DNA] Not specified (variant-level coverage filtering applied)\n[RNA] ACT SOP protocol"}},{"key":"coverage-depth","label":{"ja":"カバレッジ (深度)","en":"Coverage (depth)"},"type":"number","numbers":[{"value":500,"unit":"x","high":null,"prefix":{"ja":"NGSシーケンスの平均深度: ","en":"NGS Sequencing Mean Depth: "},"suffix":{"ja":" (以上)","en":" (Or more)"}},{"value":20000,"unit":"x","high":null,"prefix":{"ja":"総深度: ","en":"Total depth: "},"suffix":{"ja":" (以上)","en":" (Or more)"}}]},{"key":"processed-data-type","label":{"ja":"加工データの種類","en":"Processed data type"},"type":"vocabulary","terms":[{"code":"variant-summary","label":{"en":"Variant summary"}},{"code":"cnv-summary","label":{"en":"CNV summary"}},{"code":"fusion-summary","label":{"en":"Fusion summary"}},{"code":"clinical-characteristics","label":{"en":"Clinical characteristics"}}]},{"key":"has-phenotype-data","label":{"ja":"表現型データの有無","en":"Phenotype data"},"type":"vocabulary","terms":[{"code":"included","label":{"ja":"あり","en":"Included"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":435457,"fileFormats":[{"code":"xlsx","label":{"en":"XLSX"}}]}