{"id":"JGAD000995","research":"hum0317","url":"https://humandbs.dbcls.jp/dataset/JGAD000995","datePublished":"2025-11-19","dateModified":"2025-11-19","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（Exome）","en":"NGS (Exome)"}}],"experiments":[{"label":"WES","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"非小細胞肺がん（ICD10：C349）\n患者生殖細胞系列細胞：3症例 3検体\n患者腫瘍組織：4症例 4検体\nPDX腫瘍組織：4症例 12検体\nがん（ICD10：C00-C97）\n患者生殖細胞系列細胞：44＋269症例 44＋269検体\n患者腫瘍組織：125症例 125検体\nPDX腫瘍組織：52＋269症例 52＋795検体\nがん（269症例）","en":"Non-small cell lung cancer (ICD10: C349)\n- germline tissues: 3 cases, 3 samples\n- tumor tissues: 4 cases, 4 samples\n- tumor tissues from PDX: 4 cases, 12 samples\nCancer (ICD10: C00-C97)\n- germline tissues: 44 + 269 cases, 44 + 269 samples\n- tumor tissues: 125 cases 125 samples\n- tumor tissues from PDX: 52 + 269 cases, 52 + 795 samples\nCancer (269 cases)"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C349","label":{"ja":"気管支又は肺，部位不明","en":"Malignant neoplasm: Bronchus or lung, unspecified"}}],"name":{"ja":"非小細胞肺がん","en":"Non-small cell lung cancer"}},{"terms":[],"name":{"ja":"がん","en":"Cancer"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"患者生殖細胞系列細胞、患者腫瘍およびPDX腫瘍から抽出したDNA","en":"DNAs extracted from germline tissues, tumor tissues, and tumor tissues from PDX"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"pdx","label":{"ja":"PDX (患者由来異種移植)","en":"PDX"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wes","label":{"en":"WES"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"twist-comprehensive-exome-panel","label":{"en":"Twist Comprehensive Exome Panel"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応、超音波断片化","en":"Enzymatic fragmentation, Ultrasonic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":9719036486582,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]}