{"id":"JGAD000969","research":"hum0521","url":"https://humandbs.dbcls.jp/dataset/JGAD000969","datePublished":"2025-09-01","dateModified":"2025-09-19","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（scRNA-seq、scBCR-seq、scTCR-seq、CITE-seq）","en":"NGS (scRNA-seq, scBCR-seq, scTCR-seq, CITE-seq)"}}],"experiments":[{"label":"scRNA-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"子宮体がん（ICD10：C549）：10症例\n腫瘍組織より分離したB細胞：10症例11検体\n（10症例のうち1症例は2回のscRNA-seqデータ取得）\n腫瘍組織より分離したT細胞：5症例5検体\n遺伝性乳がん卵巣がん症候群（ICD10：R798）：1症例\n正常子宮組織より分離したB細胞：1症例1検体\n正常子宮組織より分離したT細胞：1症例1検体","en":"uterine cancer (ICD10: C549): 10 cases\nB cells isolated from tumor tissues: 10 cases, 11 samples\n(one of them acquired scRNA-seq data twice)\nT cells isolated from tumor tissues: 5 cases, 5 samples\nhereditary breast and ovarian cancer syndrome (ICD10: R798): 1 case\nB cells isolated from non-tumor tissues: 1 case, 1 sample\nT cells isolated from non-tumor tissues: 1 case, 1 sample"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C549","label":{"ja":"子宮体部，部位不明","en":"Malignant neoplasm: Corpus uteri, unspecified"}}],"name":{"ja":"子宮体がん","en":"uterine cancer"}},{"terms":[{"code":"R798","label":{"ja":"その他の明示された血液化学的異常所見","en":"Other specified abnormal findings of blood chemistry"}}],"name":{"ja":"遺伝性乳がん卵巣がん症候群","en":"hereditary breast and ovarian cancer syndrome"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":18,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"sample","label":{"ja":"検体数","en":"Sample"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"子宮検体より分離したB細胞およびT細胞","en":"B and T cells isolated from uterine tissue"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"uterus","label":{"ja":"子宮","en":"Uterus"}},{"code":"b-cell","label":{"ja":"B 細胞","en":"B cell"}},{"code":"t-cell","label":{"ja":"T 細胞","en":"T cell"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"scrna-seq","label":{"en":"scRNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-3-v3-1","label":{"en":"Chromium Next GEM Single Cell 3' v3.1"}},{"code":"chromium-next-gem-single-cell-5-v2","label":{"en":"Chromium Next GEM Single Cell 5' v2"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"上記キットに準拠","en":"included in the above library construction kit"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":null},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Cell Ranger v5.0.1","en":"Cell Ranger v5.0.1"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"Cell Ranger v5.0.1","en":"Cell Ranger v5.0.1"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cell Ranger v5.0.1","en":"Cell Ranger v5.0.1"}},{"key":"gene-number","label":{"ja":"遺伝子数","en":"Gene count"},"type":"number","numbers":null},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":"scBCR-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"子宮体がん（ICD10：C549）：4症例\n腫瘍組織より分離したB細胞：4症例4検体\n遺伝性乳がん卵巣がん症候群（ICD10：R798）：1症例\n正常子宮組織より分離したB細胞：1症例1検体","en":"uterine cancer (ICD10: C549): 4 cases\nB cells isolated from tumor tissues: 4 cases, 4 samples\nhereditary breast and ovarian cancer syndrome (ICD10: R798): 1 case\nB cells isolated from non-tumor tissues: 1 case, 1 sample"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C549","label":{"ja":"子宮体部，部位不明","en":"Malignant neoplasm: Corpus uteri, unspecified"}}],"name":{"ja":"子宮体がん","en":"uterine cancer"}},{"terms":[{"code":"R798","label":{"ja":"その他の明示された血液化学的異常所見","en":"Other specified abnormal findings of blood chemistry"}}],"name":{"ja":"遺伝性乳がん卵巣がん症候群","en":"hereditary breast and ovarian cancer syndrome"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":5,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"子宮検体より分離したB細胞","en":"B cells isolated from uterine tissue"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"uterus","label":{"ja":"子宮","en":"Uterus"}},{"code":"b-cell","label":{"ja":"B 細胞","en":"B cell"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"bcr-seq","label":{"en":"BCR-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-5-v2","label":{"en":"Chromium Next GEM Single Cell 5' v2"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"上記キットに準拠","en":"included in the above library construction kit"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":null},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Cell Ranger v5.0.1","en":"Cell Ranger v5.0.1"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"Cell Ranger v5.0.1","en":"Cell Ranger v5.0.1"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cell Ranger v5.0.1","en":"Cell Ranger v5.0.1"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":"scTCR-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"子宮体がん（ICD10：C549）：5症例\n腫瘍組織より分離したT細胞：5症例5検体\n遺伝性乳がん卵巣がん症候群（ICD10：R798）：1症例\n正常子宮組織より分離したT細胞：1症例1検体","en":"uterine cancer (ICD10: C549): 5 cases\nT cells isolated from tumor tissues: 5 cases, 5 samples\nhereditary breast and ovarian cancer syndrome (ICD10: R798): 1 case\nT cells isolated from non-tumor tissues: 1 case, 1 sample"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C549","label":{"ja":"子宮体部，部位不明","en":"Malignant neoplasm: Corpus uteri, unspecified"}}],"name":{"ja":"子宮体がん","en":"uterine cancer"}},{"terms":[{"code":"R798","label":{"ja":"その他の明示された血液化学的異常所見","en":"Other specified abnormal findings of blood chemistry"}}],"name":{"ja":"遺伝性乳がん卵巣がん症候群","en":"hereditary breast and ovarian cancer syndrome"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":6,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"子宮検体より分離したT細胞","en":"T cells isolated from uterine tissue"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"uterus","label":{"ja":"子宮","en":"Uterus"}},{"code":"t-cell","label":{"ja":"T 細胞","en":"T cell"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"tcr-seq","label":{"en":"TCR-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-5-v2","label":{"en":"Chromium Next GEM Single Cell 5' v2"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"上記キットに準拠","en":"included in the above library construction kit"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":null},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Cell Ranger v5.0.1","en":"Cell Ranger v5.0.1"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"Cell Ranger v5.0.1","en":"Cell Ranger v5.0.1"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cell Ranger v5.0.1","en":"Cell Ranger v5.0.1"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":"CITE-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"子宮体がん（ICD10：C549）：6症例\n腫瘍組織より分離したB細胞：6症例6検体\n腫瘍組織より分離したT細胞：5症例5検体","en":"uterine cancer (ICD10: C549): 6 cases\nB cells isolated from tumor tissues: 6 cases, 6 samples\nT cells isolated from tumor tissues: 5 cases, 5 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C549","label":{"ja":"子宮体部，部位不明","en":"Malignant neoplasm: Corpus uteri, unspecified"}}],"name":{"ja":"子宮体がん","en":"uterine cancer"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":11,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"sample","label":{"ja":"検体数","en":"Sample"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"子宮検体より分離したB細胞およびT細胞","en":"B and T cells isolated from uterine tissue"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"uterus","label":{"ja":"子宮","en":"Uterus"}},{"code":"b-cell","label":{"ja":"B 細胞","en":"B cell"}},{"code":"t-cell","label":{"ja":"T 細胞","en":"T cell"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"cite-seq","label":{"en":"CITE-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-3-v3-1","label":{"en":"Chromium Next GEM Single Cell 3' v3.1"}},{"code":"chromium-next-gem-single-cell-5-v2","label":{"en":"Chromium Next GEM Single Cell 5' v2"}},{"code":"totalseq-b","label":{"en":"TotalSeq-B"}},{"code":"totalseq-c","label":{"en":"TotalSeq-C"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"上記キットに準拠","en":"included in the above library construction kit"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":null},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":null},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Cell Ranger v5.0.1","en":"Cell Ranger v5.0.1"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"Cell Ranger v5.0.1","en":"Cell Ranger v5.0.1"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cell Ranger v5.0.1","en":"Cell Ranger v5.0.1"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":1171097259826,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}},{"code":"csv","label":{"en":"CSV"}}]}