{"id":"JGAD000922","research":"hum0413","url":"https://humandbs.dbcls.jp/dataset/JGAD000922","datePublished":"2025-04-18","dateModified":"2025-04-18","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（RNA-seq）","en":"NGS (RNA-seq)"}}],"experiments":[{"label":"RNA-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"アトピー性皮膚炎（ICD10：L20.9）：156症例（115症例はJGAS000628と重複）\n皮膚：951検体（189検体はJGAS000628と重複）\n乾癬（ICD10：L40.9）：18症例\n皮膚：36検体\n健常者：26名（16名はJGAS000628と重複）\n皮膚：49検体（30検体はJGAS000628と重複）","en":"Atopic dermatitis (ICD10: L20.9): 156 cases (115 cases are used in JGAS000628)\nskin tissue: 951 samples (189 samples are used in JGAS000628)\nPsoriasis: 18 cases\nskin tissue: 36 samples\n26 Healthy controls (16 individuals are used in JGAS000628)\nskin tissue: 49 samples (30 samples are used in JGAS000628)"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"L209","label":{"ja":"アトピー性皮膚炎，詳細不明","en":"Atopic dermatitis, unspecified"}}],"name":{"ja":"アトピー性皮膚炎","en":"Atopic dermatitis"}},{"terms":[{"code":"L409","label":{"ja":"乾せん＜癬＞，詳細不明","en":"Psoriasis, unspecified"}}],"name":{"ja":"乾癬","en":"Psoriasis"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":271,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"皮膚検体およびPBMC検体から抽出したRNA","en":"RNAs extracted from skin tissues or PBMC"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"skin","label":{"ja":"皮膚","en":"Skin"}},{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"pbmc","label":{"ja":"末梢血単核球 (PBMC)","en":"PBMC"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"nebnext-ultra-rna-library-prep-kit-for-illumina","label":{"en":"NEBNext Ultra RNA Library Prep Kit for Illumina"}},{"code":"sureselect-strand-specific-rna-library-prep-kit","label":{"en":"SureSelect Strand-Specific RNA Library Prep Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"高温条件下での2価陽イオンによる断片化","en":"Exposure to divalent cations at elevated temperatures"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-hiseq-1500","label":{"en":"Illumina HiSeq 1500"}},{"code":"illumina-hiseq-2500","label":{"en":"Illumina HiSeq 2500"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"single-end","label":{"ja":"シングルエンド","en":"Single-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":50,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":552958296945,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]}