{"id":"JGAD000919","research":"hum0497","url":"https://humandbs.dbcls.jp/dataset/JGAD000919","datePublished":"2025-08-08","dateModified":"2025-08-08","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（RNA-seq）","en":"NGS (RNA-seq)"}}],"experiments":[{"label":{"ja":"RNA-seq","en":"RNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"ヒト妊娠後期胎盤（ICD10：O82.0、O80.0）：3名\n絨毛膜から樹立した栄養膜幹細胞（Ch-TS）：3検体\n栄養膜幹細胞を分化誘導した絨毛外栄養膜細胞（Ch-EVT）：3検体\n栄養膜幹細胞を分化誘導した合胞体栄養膜細胞（Ch-ST）：3検体\nRIKEN BRCより入手した栄養膜幹細胞（CT27、CT29、bTS5）\n栄養膜幹細胞：3検体\n栄養膜幹細胞（CT27、CT29）を分化誘導した絨毛外栄養膜細胞：2検体\n栄養膜幹細胞（CT27、CT29）を分化誘導した合胞体栄養膜細胞：2検体","en":"human term placentas from three individuals (ICD10: O82.0, O80.0)\ntrophoblast stem cell (Ch-TS) lines derived from the chorion: 3 samples\ndifferentiated extravillous trophoblast cells (Ch-EVT): 3 samples\ndifferentiated syncytiotrophoblast cells (Ch-ST): 3 samples\nhuman trophoblast stem cell lines from RIKEN BRC (CT27, CT29, bTS5)\ntrophoblast stem cells: 3 samples\ndifferentiated extravillous trophoblast cells: 2 samples\ndifferentiated syncytiotrophoblast cells: 2 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"O820","label":{"ja":"選択的帝王切開による分娩","en":"Delivery by elective caesarean section"}},{"code":"O800","label":{"ja":"自然頭位分娩","en":"Spontaneous vertex delivery"}}],"name":{"ja":"ヒト妊娠後期胎盤","en":"human term placentas"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":3,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"栄養膜幹細胞、絨毛外栄養膜細胞、合胞体栄養膜細胞から抽出したtotal RNA","en":"total RNA extracted from trophoblast stem cells, extravillous trophoblast cells and syncytiotrophoblast cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"placenta","label":{"ja":"胎盤","en":"Placenta"}},{"code":"chorion","label":{"en":"Chorion"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"cell-line","label":{"ja":"細胞株","en":"Cell 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Illumina"}},{"code":"nebnext-multiplex-oligos-for-illumina","label":{"en":"NEBNext Multiplex Oligos for Illumina"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"94℃で化学的断片化","en":"chemical fragmentation at 94℃"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":100,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"HISAT2","en":"HISAT2"}},{"key":"mapping-quality","label":{"ja":"マッピング品質","en":"Mapping quality"},"type":"text","text":{"ja":"マッピング率>98%","en":"Mapping rate>98%"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"featureCounts（GRCh38.106）","en":"featureCounts (GRCh38.106)"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":47269735783,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}},{"code":"csv","label":{"en":"CSV"}}]}