{"id":"JGAD000901","research":"hum0405","url":"https://humandbs.dbcls.jp/dataset/JGAD000901","datePublished":"2025-12-03","dateModified":"2025-12-03","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（RNA-seq）","en":"NGS (RNA-seq)"}}],"experiments":[{"label":"RNA-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"小児B前駆細胞性急性リンパ性白血病 （ICD10：C910）：69症例\n末梢血もしくは骨髄液由来の腫瘍細胞：69検体\n小児急性骨髄性白血病 （ICD10：C920）：9症例 （5症例は初発時は小児B前駆細胞性急性リンパ性白血病、再発時に急性骨髄性白血病を呈した症例）\n初発時、再発時の末梢血もしくは骨髄液由来の腫瘍細胞：15検体\nB細胞性前リンパ球性白血病（ICD10：C91.3）：16症例 （寛解9症例、再発7症例）\nCAR-T製剤中のT細胞をソートしたCD38-CD73-Tim-3-HLA-DR+（4 marker-defined; 4MD）分画：13検体（寛解7症例、再発6症例）\n4MD以外の分画：16検体（寛解9症例、再発7症例）","en":"Pediatric B-cell precursor acute lymphocytic leukemia (ICD10: C910): 69 cases\nleukemia cells from peripheral blood or bone marrow fluid: 69 samples\nPediatric acute myeloid leukemia (ICD10: C920): 9 cases (5 cases revealed pediatric B-cell precursor acute lymphocytic leukemia at onset and Pediatric acute myeloid leukemia at relapse)\nwhole blood or bone marrow aspirates at disease onset or relapse: 15 samples\nB-cell precursor acute myeloid leukemia (ICD10: C91.3): 16 cases\nT cells in each patient's infusion product sorted into CD38-CD73-Tim-3-HLA-DR+ (4 marker-defined; 4MD) fraction: 13 samples\nnon-4MD fractions: 16 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C910","label":{"ja":"急性リンパ芽球性白血病［ALL］","en":"Acute lymphoblastic leukaemia [ALL]"}}],"name":{"ja":"小児B前駆細胞性急性リンパ性白血病","en":"Pediatric B-cell precursor acute lymphocytic leukemia"}},{"terms":[{"code":"C920","label":{"ja":"急性骨髄芽球性白血病［AML］","en":"Acute myeloblastic leukaemia [AML]"}}],"name":{"ja":"小児急性骨髄性白血病","en":"Pediatric acute myeloid leukemia"}},{"terms":[{"code":"C913","label":{"ja":"B細胞性前リンパ性白血病","en":"Prolymphocytic leukaemia of B-cell type"}}],"name":{"ja":"B細胞性前リンパ球性白血病","en":"B-cell precursor acute myeloid leukemia"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":94,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"child","label":{"ja":"小児","en":"Child"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍細胞もしくはT細胞から抽出したRNA","en":"RNAs extracted from leukemia cells or T-cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"bone-marrow","label":{"ja":"骨髄","en":"Bone marrow"}},{"code":"t-cell","label":{"ja":"T 細胞","en":"T cell"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"nebnext-ultra-ii-directional-rna-library-prep-kit-for-illumina","label":{"en":"NEBNext Ultra II Directional RNA Library Prep Kit for Illumina"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"熱処理","en":"Heat treatment"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-hiseq-x","label":{"en":"Illumina HiSeq X"}},{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch37","label":{"en":"GRCh37"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Genomon v2.6.2/v2.6.3","en":"Genomon v2.6.2/v2.6.3"}},{"key":"mapping-quality","label":{"ja":"マッピング品質","en":"Mapping quality"},"type":"text","text":{"ja":"unmapped reads < 5%","en":"unmapped reads < 5%"}},{"key":"coverage-breadth","label":{"ja":"カバレッジ (割合)","en":"Coverage (breadth)"},"type":"number","numbers":[{"value":90,"unit":"%","high":null,"prefix":{"ja":"ユニークにマップされたリードの割合: ","en":"Uniquely mapped reads: "},"suffix":{"ja":" (超)","en":" (More than)"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":271578503625,"fileFormats":[{"code":"bam","label":{"en":"BAM"}},{"code":"bai","label":{"en":"BAI"}}]}