{"id":"JGAD000891","research":"hum0201","url":"https://humandbs.dbcls.jp/dataset/JGAD000891","datePublished":"2024-10-17","dateModified":"2024-10-17","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"JGAD000335の加工データ（ミトコンドリアのバリアントコール）","en":"Processed data of JGAD000335 by JGA (mitochondrial variant calls)"}}],"experiments":[{"label":"WGS","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"腫瘍性疾患：23症例（55検体）\n（腫瘍組織および非腫瘍組織より樹立したオルガノイドおよび末梢血）\n小細胞肺がん（ICD10：C34）\n胆道がん（ICD10：C23, C24, C78）\n大腸がん（ICD10：C18-20）\n十二指腸がん（ICD10：C17）\n食道がん（ICD10：C15）\n胃がん（ICD10：C16, C78）\n肝がん（ICD10：C22）\n膵がん（ICD10：C25）","en":"Neoplastic disease: 23 cases (55 samples)\nSmall cell lung cancer (ICD10: C34)\nBiliary tract cancer (ICD10: C23, C24, C78)\nColon cancer (ICD10: C18-20)\nDuodenal cancer (ICD10: C17)\nEsophageal cancer (ICD10: C15)\nStomach cancer (ICD10: C16, C78)\nLiver cancer (ICD10: C22)\nPancreatic cancer (ICD10: C25)"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C34","label":{"ja":"気管支及び肺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bronchus and lung"}}],"name":{"ja":"小細胞肺がん","en":"Small cell lung cancer"}},{"terms":[{"code":"C23","label":{"ja":"胆のう＜嚢＞の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of gallbladder"}},{"code":"C24","label":{"ja":"その他及び部位不明の胆道の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and unspecified parts of biliary tract"}},{"code":"C78","label":{"ja":"呼吸器及び消化器の続発性悪性新生物＜腫瘍＞","en":"Secondary malignant neoplasm of respiratory and digestive organs"}}],"name":{"ja":"胆道がん","en":"Biliary tract cancer"}},{"terms":[{"code":"C18","label":{"ja":"結腸の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of colon"}},{"code":"C19","label":{"ja":"直腸S状結腸移行部の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of rectosigmoid junction"}},{"code":"C20","label":{"ja":"直腸の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of rectum"}}],"name":{"ja":"大腸がん","en":"Colon cancer"}},{"terms":[{"code":"C17","label":{"ja":"小腸の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of small intestine"}}],"name":{"ja":"十二指腸がん","en":"Duodenal cancer"}},{"terms":[{"code":"C15","label":{"ja":"食道の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of oesophagus"}}],"name":{"ja":"食道がん","en":"Esophageal cancer"}},{"terms":[{"code":"C16","label":{"ja":"胃の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of stomach"}},{"code":"C78","label":{"ja":"呼吸器及び消化器の続発性悪性新生物＜腫瘍＞","en":"Secondary malignant neoplasm of respiratory and digestive organs"}}],"name":{"ja":"胃がん","en":"Stomach cancer"}},{"terms":[{"code":"C22","label":{"ja":"肝及び肝内胆管の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of liver and intrahepatic bile ducts"}}],"name":{"ja":"肝がん","en":"Liver cancer"}},{"terms":[{"code":"C25","label":{"ja":"膵の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of pancreas"}}],"name":{"ja":"膵がん","en":"Pancreatic cancer"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":55,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"sample","label":{"ja":"検体数","en":"Sample"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織および非腫瘍組織より樹立したオルガノイドおよび末梢血から抽出したDNA","en":"DNAs extracted from peripheral blood cells and organoids established from normal and cancer tissues of the patients"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"organoid","label":{"ja":"オルガノイド","en":"Organoid"}},{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wgs","label":{"en":"WGS"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"超音波断片化","en":"Ultrasonic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-hiseq-x","label":{"en":"Illumina HiSeq X"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":300,"unit":"bp","high":null}]},{"key":"processed-data-type","label":{"ja":"加工データの種類","en":"Processed data type"},"type":"vocabulary","terms":[{"code":"mitochondrial-variant-calls","label":{"en":"Mitochondrial variant calls"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":555714,"fileFormats":[{"code":"vcf","label":{"en":"VCF"}},{"code":"idx","label":{"en":"IDX"}}]}