{"id":"JGAD000760","research":"hum0393","url":"https://humandbs.dbcls.jp/dataset/JGAD000760","datePublished":"2025-10-29","dateModified":"2025-10-29","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（RNA-seq）","en":"NGS (RNA-seq)"}}],"experiments":[{"label":"RNA-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"IgG4関連疾患（ICD10：M359）：4症例\n顎下腺：3検体\n末梢血単核球：4検体\n原発性シェーグレン症候群（ICD10：M350）：3症例\n末梢血単核球：3検体\n健常者：3名\n末梢血単核球：3検体\n各検体からCD19+細胞およびT細胞を1検体ずつ取得：合計 26検体","en":"treatment naïve IgG4-RD (ICD10: M359): 4 cases\nSubmandibular glands: 3 samples\nPBMCs: 4 samples\nprimary Sjögren's syndrome (ICD10: M350): 3 cases\nPBMCs: 3 samples\nHealthy control: 3 individuals\nPBMCs: 3 samples\nCD19+cells and PanT cells were obtained from each sample: total 26 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"M359","label":{"ja":"全身性結合組織疾患，詳細不明","en":"Systemic involvement of connective tissue, unspecified"}}],"name":{"ja":"IgG4関連疾患","en":"treatment naïve IgG4-RD"}},{"terms":[{"code":"M350","label":{"ja":"乾燥症候群［シェーグレン＜Sjogren＞症候群］","en":"Sicca syndrome [Sjögren]"}}],"name":{"ja":"原発性シェーグレン症候群","en":"primary Sjögren's syndrome"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":22,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"CD19+細胞検体およびT細胞検体から抽出したRNA","en":"RNAs extracted from CD19+cells and PanT cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"submandibular-gland","label":{"en":"Submandibular gland"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"nebnext-ultra-ii-dna-library-prep-kit-for-illumina","label":{"en":"NEBNext Ultra II DNA Library Prep Kit for Illumina"}},{"code":"smart-seq","label":{"en":"SMART-Seq"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"上記キットに準拠","en":"included in the above library construction kit"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-nextseq-500","label":{"en":"Illumina NextSeq 500"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":36,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch37","label":{"en":"GRCh37"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"CLC Genomics Workbench","en":"CLC Genomics Workbench"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":null,"en":null}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"CLC Genomics Workbench","en":"CLC Genomics Workbench"}},{"key":"gene-number","label":{"ja":"遺伝子数","en":"Gene count"},"type":"number","numbers":[{"value":57768,"unit":null,"high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":26015248188,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}},{"code":"csv","label":{"en":"CSV"}}]}