{"id":"JGAD000740","research":"hum0344","url":"https://humandbs.dbcls.jp/dataset/JGAD000740","datePublished":"2023-05-10","dateModified":"2023-05-10","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（Amplicon-seq）","en":"NGS (Amplicon-seq)"}}],"experiments":[{"label":"RNA Amplicon-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"慢性腎臓病ステージG1、G2、G4、G5 （ICD10：N18.1、N18.2、N18.4、N18.5）：77症例（78検体）\nHEK293細胞株：1検体","en":"Chronic kidney disease, CKD stage G1, G2, G4, G5 (ICD10: N18.1, N18.2, N18.4, N18.5): 77 cases (78 samples)\nHEK293 cell line: 1 sample"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"N181","label":{"ja":"慢性腎臓病，ステージ１","en":"Chronic kidney disease, stage 1"}},{"code":"N182","label":{"ja":"慢性腎臓病，ステージ２","en":"Chronic kidney disease, stage 2"}},{"code":"N184","label":{"ja":"慢性腎臓病，ステージ４","en":"Chronic kidney disease, stage 4"}},{"code":"N185","label":{"ja":"慢性腎臓病，ステージ５","en":"Chronic kidney disease, stage 5"}}],"name":{"ja":"G5","en":"G5"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":77,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"慢性腎臓病症例の非腫瘍組織およびHEK293細胞株から抽出したミトコンドリアDNA","en":"mitochondrial DNAs extracted from non-tumor tissues from chronic kidney disease patients and HEK293 cell line"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"kidney","label":{"ja":"腎臓","en":"Kidney"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"cell-line","label":{"ja":"細胞株","en":"Cell line"},"type":"vocabulary","terms":[{"code":"hek293","label":{"en":"HEK293"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":"293 0HEK-2931 (American Type Culture Collection、CRL-1573™)","en":"293 0HEK-2931 (American Type Culture Collection, CRL-1573™)"}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"amplicon-seq","label":{"en":"Amplicon-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":"ミトコンドリアゲノム","en":"mitochondrial genome"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"kapa-hyper-prep-kit","label":{"en":"KAPA Hyper Prep Kit"}},{"code":"truseq-dna-sample-prep-kit","label":{"en":"TruSeq DNA Sample Prep Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"超音波断片化 (Covaris)","en":"Ultrasonic fragmentation (Covaris)"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-hiseq-2500","label":{"en":"Illumina HiSeq 2500"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":126,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":53999523376,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]}