{"id":"JGAD000735","research":"hum0391","url":"https://humandbs.dbcls.jp/dataset/JGAD000735","datePublished":"2024-09-25","dateModified":"2024-09-25","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（scRNA-seq、scATAC-seq）","en":"NGS (scRNA-seq, scATAC-seq)"}}],"experiments":[{"label":"scRNA-seq + scATAC-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"舌がん（ICD10：C01、C02）：4症例\n腫瘍組織から樹立したオルガノイド：4検体","en":"Tongue cancer (ICD10: C01, C02): 4 cases\norganoids established from tumor tissues: 4 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C01","label":{"ja":"舌根＜基底＞部の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of base of tongue"}},{"code":"C02","label":{"ja":"舌のその他及び部位不明の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and unspecified parts of tongue"}}],"name":{"ja":"舌がん","en":"Tongue cancer"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":4,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"オルガノイドから抽出したDNAおよびRNA","en":"DNAs/RNAs extracted from organoids"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"organoid","label":{"ja":"オルガノイド","en":"Organoid"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"scrna-seq","label":{"en":"scRNA-seq"}},{"code":"scatac-seq","label":{"en":"scATAC-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-multiome-atac-gene-expression","label":{"en":"Chromium Next GEM Single Cell Multiome ATAC + Gene Expression"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":118,"unit":"bp","high":null,"prefix":{"ja":"scRNA-seq: ","en":"scRNA-seq: "}},{"value":99,"unit":"bp","high":null,"prefix":{"ja":"scATAC-seq: ","en":"scATAC-seq: "}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":318443600525,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]}