{"id":"JGAD000704","research":"hum0379","url":"https://humandbs.dbcls.jp/dataset/JGAD000704","datePublished":"2023-11-20","dateModified":"2023-11-20","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（scRNA-seq、scVDJ-seq）","en":"NGS (scRNA-seq, scVDJ-seq)"}}],"experiments":[{"label":"scRNA-seq + scVDJ-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"MG （ICD10：G70.0）：2症例（CD4+T細胞・B細胞の2検体ずつ）\nMS（ICD10：G35）：4症例（CD4+T細胞・B細胞の2検体ずつ3症例、CD4+T細胞とB細胞の混合1検体）\nSLE（ICD10：M32.9）：3症例（CD4+T細胞・B細胞の2検体ずつ2症例、CD4+T細胞1検体）\n健常者：3名（CD4+T細胞・B細胞の2検体ずつ）","en":"MG (ICD10: G70.0): 2 cases (CD4+ T cell and B cell specimens each)\nMS (ICD10: G35): 4 cases (3 cases of CD4+ T cell and B cell specimens each + 1 mixed CD4+ T cell and B cell specimen)\nSLE (ICD10: M32.9): 3 cases (3 cases of CD4+ T cell and B cell specimens each + 1 CD4+ T cell pecimen)\n3 healthy cases (CD4+ T cell and B cell specimens each)"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"G700","label":{"ja":"重症筋無力症","en":"Myasthenia gravis"}}],"name":{"ja":"MG","en":"MG"}},{"terms":[{"code":"G35","label":{"ja":"多発性硬化症","en":"Multiple sclerosis"}}],"name":{"ja":"MS","en":"MS"}},{"terms":[{"code":"M329","label":{"ja":"全身性エリテマトーデス＜紅斑性狼瘡＞＜SLE＞，詳細不明","en":"Systemic lupus erythematosus, unspecified"}}],"name":{"ja":"SLE","en":"SLE"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":12,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"末梢血のCD4+T細胞およびB細胞より抽出したRNA","en":"RNAs extracted from CD4+ T cell and B cell isolated from peripheral blood"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"cd4-t-cell","label":{"ja":"CD4 陽性 T 細胞","en":"CD4+ T cell"}},{"code":"b-cell","label":{"ja":"B 細胞","en":"B cell"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"scrna-seq","label":{"en":"scRNA-seq"}},{"code":"vdj-seq","label":{"en":"VDJ-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-5-v2","label":{"en":"Chromium Next GEM Single Cell 5' v2"}},{"code":"chromium-single-cell-human-bcr-amplification-kit","label":{"en":"Chromium Single Cell Human BCR Amplification Kit"}},{"code":"chromium-single-cell-human-tcr-amplification-kit","label":{"en":"Chromium Single Cell Human TCR Amplification Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"上記キットに準拠","en":"included in the above library construction kit"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":91,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":511036648235,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}},{"code":"tsv","label":{"en":"TSV"}}]}