{"id":"JGAD000629","research":"hum0195","url":"https://humandbs.dbcls.jp/dataset/JGAD000629","datePublished":"2022-03-04","dateModified":"2025-12-08","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（Exome）","en":"NGS (Exome)"}}],"experiments":[{"label":"WES","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"C型肝炎ウイルス排除後に肝がんを発症した慢性肝炎/肝硬変（ICD10：K746、C220）：12症例\n腫瘍組織：12検体\n末梢血より単離したリンパ球：12検体\n胃がんを伴う慢性胃炎（ICD10：C169）：11症例\n腫瘍組織：11検体、非腫瘍組織：38検体、末梢血：11検体\n胃がん（ICD10：C169）：1 ＋ 1症例\n腫瘍組織：2検体、非腫瘍組織：2＋3検体、末梢血：1＋1検体\n胃粘膜下腫瘍（ICD10：D371）：3症例\n非腫瘍組織：6検体、末梢血：3検体","en":"liver cirrhosis and hepatocellular carcinoma after hepatitis C virus eradication (ICD10: K746, C220): 12 cases\ntumor tissues: 12 samples\nlymphocytes isolated from peripheral blood: 12 samples\nchronic gastritis with gastric cancer (ICD10: C169): 11 cases\ntumor tissues: 11 samples, non-tumor tissues: 38 samples, peripheral blood: 11 samples\ngastric cancer (ICD10: C169): 1 + 1 case\ntumor tissues: 2 samples\nnon-tumor tissues: 2 + 3 samples & peripheral blood: 1 + 1 sample\ngastric submucosal tumor (ICD10: D371): 3 cases\nnon-tumor tissues: 6 samples, peripheral blood: 3 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"K746","label":{"ja":"その他及び詳細不明の肝硬変","en":"Other and unspecified cirrhosis of liver"}},{"code":"C220","label":{"ja":"肝細胞癌","en":"Malignant neoplasm: Liver cell carcinoma"}}],"name":{"ja":"C型肝炎ウイルス排除後に肝がんを発症した慢性肝炎/肝硬変","en":"liver cirrhosis and hepatocellular carcinoma after hepatitis C virus eradication"}},{"terms":[{"code":"C169","label":{"ja":"胃，部位不明","en":"Malignant neoplasm: Stomach, unspecified"}}],"name":{"ja":"胃がんを伴う慢性胃炎","en":"chronic gastritis with gastric cancer"}},{"terms":[{"code":"C169","label":{"ja":"胃，部位不明","en":"Malignant neoplasm: Stomach, unspecified"}}],"name":{"ja":"胃がん","en":"gastric cancer"}},{"terms":[{"code":"D371","label":{"ja":"胃","en":"Neoplasm of uncertain or unknown behaviour: Stomach"}}],"name":{"ja":"胃粘膜下腫瘍","en":"gastric submucosal tumor"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":28,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"肝がん症例の腫瘍組織および末梢血より単離したリンパ球から抽出したDNA\n胃がんおよび胃粘膜下腫瘍症例の腫瘍組織、非腫瘍組織、ならびに末梢血から抽出したDNA","en":"DNAs extracted from tumor tissues and lymphocytes isolated from peripheral blood of hepatocellular carcinoma\nDNAs extracted from tumor tissues, non-tumor tissues, and peripheral blood samples of gastric cancer and gastric submucosal tumor"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"lymphocyte","label":{"ja":"リンパ球","en":"Lymphocyte"}},{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wes","label":{"en":"WES"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"ion-ampliseq-exome-rdy-kit","label":{"en":"Ion AmpliSeq Exome RDY Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic Fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"thermo-fisher-scientific-ion-proton","label":{"en":"Thermo Fisher Scientific Ion Proton"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"single-end","label":{"ja":"シングルエンド","en":"Single-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":268812239360,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]}