{"id":"JGAD000506","research":"hum0103","url":"https://humandbs.dbcls.jp/dataset/JGAD000506","datePublished":"2022-01-14","dateModified":"2022-01-14","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（WGS）\nNGS（Exome）\nNGS（RNA-seq）","en":"NGS (WGS)\nNGS (Exome)\nNGS (RNA-seq)"}}],"experiments":[{"label":"RNA-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"胆道がん（ICD10：C221, C240, C248, C23）：100 症例（KAPA：44 症例、TruSeq：73 症例、両方実施：17 症例）\n腫瘍組織：100 検体（KAPA：44 検体、TruSeq：73 検体）\n正常胆嚢：4 名\n非腫瘍組織：4 検体","en":"biliary tract cancer (ICD10: C221, C240, C248, C23): 100 cases (KAPA: 44 cases, TruSeq: 73 cases, both protocols: 17 cases)\ncancer tissues: 100 samples (KAPA: 44 samples, TruSeq: 73 samples)\nnormal gallbladder: 4 cases (collected from pancreatic cancer surgery cases)\nnon-cancer tissues: 4 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C221","label":{"ja":"肝内胆管癌","en":"Malignant neoplasm: Intrahepatic bile duct carcinoma"}},{"code":"C240","label":{"ja":"肝外胆管","en":"Malignant neoplasm: Extrahepatic bile duct"}},{"code":"C248","label":{"ja":"胆道の境界部病巣","en":"Malignant neoplasm: Overlapping lesion of biliary tract"}},{"code":"C23","label":{"ja":"胆のう＜嚢＞の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of gallbladder"}}],"name":{"ja":"胆道がん","en":"biliary tract cancer"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":104,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"胆道がん切除切片における腫瘍組織および膵がん手術症例から採取した正常胆嚢から抽出したRNA","en":"RNAs extracted from cancer tissues from biliary tract cancer patients and non-cancer tissues from normal gallbladders"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"gallbladder","label":{"en":"Gallbladder"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"kapa-rna-hyperprep-kit","label":{"en":"KAPA RNA HyperPrep Kit"}},{"code":"truseq-stranded-mrna-library-prep-kit","label":{"en":"TruSeq Stranded mRNA Library Prep Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"熱処理","en":"Heat treatment"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-hiseq-2500","label":{"en":"Illumina HiSeq 2500"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":101,"unit":"bp","high":null},{"value":126,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":670194231175,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]}