{"id":"JGAD000480","research":"hum0303","url":"https://humandbs.dbcls.jp/dataset/JGAD000480","datePublished":"2025-04-10","dateModified":"2025-04-10","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（Amplicon-seq）","en":"NGS (Amplicon-seq)"}}],"experiments":[{"label":"Amplicon-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"悪性腫瘍17種類：108症例\n肺がん（ICD10：C349）、卵巣がん（ICD10：C56）、小児がん、骨軟部腫瘍（ICD10：C496）、腎がん（ICD10：C64）、脳腫瘍（ICD10：C719）、膀胱がん（ICD10：C679）、胃がん（ICD10：C169）、十二指腸乳頭部がん（ICD10：C241）、膵がん（ICD10：C259）、大腸がん（ICD10：C20、C180、C187）、食道がん（ICD10：C159）、口腔底がん（ICD10：C049）、舌がん（ICD10：C029）、中咽頭がん（ICD10：C109）、下歯肉がん（ICD10：C031）、肝がん（ICD10：C220）\n腫瘍組織および非腫瘍組織：54症例\n腫瘍組織のみ：54症例","en":"17 types of malignant tumor: 108 cases\nlung (ICD10: C349), ovary (ICD10: C56), bone (ICD10: C496), renal (ICD10: C64), brain (ICD10: C719), bladder (ICD10: C679), gastric (ICD10: C169), duodenal amupullar (ICD10: C241), pancreas (ICD10: C259), colon (ICD10: C20, C180, C187), esophageal (ICD10: C159), oral (ICD10: C049), tongue (ICD10: C029), middle pharynx (ICD10: C109), gingiva (ICD10: C031), liver (ICD10: C220)\ntumor tissues and non-tumor tissues: 54 cases\ntumor tissues only: 54 cases"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C349","label":{"ja":"気管支又は肺，部位不明","en":"Malignant neoplasm: Bronchus or lung, unspecified"}}],"name":{"ja":"肺がん","en":"lung"}},{"terms":[{"code":"C56","label":{"ja":"卵巣の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of ovary"}}],"name":{"ja":"卵巣がん","en":"ovary"}},{"terms":[{"code":"C496","label":{"ja":"体幹の結合組織及び軟部組織，部位不明","en":"Malignant neoplasm: Connective and soft tissue of trunk, unspecified"}}],"name":{"ja":"骨軟部腫瘍","en":"bone"}},{"terms":[{"code":"C64","label":{"ja":"腎盂を除く腎の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of kidney, except renal pelvis"}}],"name":{"ja":"腎がん","en":"renal"}},{"terms":[{"code":"C719","label":{"ja":"脳，部位不明","en":"Malignant neoplasm: Brain, unspecified"}}],"name":{"ja":"脳腫瘍","en":"brain"}},{"terms":[{"code":"C679","label":{"ja":"膀胱，部位不明","en":"Malignant neoplasm: Bladder, unspecified"}}],"name":{"ja":"膀胱がん","en":"bladder"}},{"terms":[{"code":"C169","label":{"ja":"胃，部位不明","en":"Malignant neoplasm: Stomach, unspecified"}}],"name":{"ja":"胃がん","en":"gastric"}},{"terms":[{"code":"C241","label":{"ja":"ファーター＜Vater＞乳頭膨大部","en":"Malignant neoplasm: Ampulla of Vater"}}],"name":{"ja":"十二指腸乳頭部がん","en":"duodenal amupullar"}},{"terms":[{"code":"C259","label":{"ja":"膵，部位不明","en":"Malignant neoplasm: Pancreas, unspecified"}}],"name":{"ja":"膵がん","en":"pancreas"}},{"terms":[{"code":"C20","label":{"ja":"直腸の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of rectum"}},{"code":"C180","label":{"ja":"盲腸","en":"Malignant neoplasm: Caecum"}},{"code":"C187","label":{"ja":"S状結腸","en":"Malignant neoplasm: Sigmoid colon"}}],"name":{"ja":"大腸がん","en":"colon"}},{"terms":[{"code":"C159","label":{"ja":"食道，部位不明","en":"Malignant neoplasm: Oesophagus, unspecified"}}],"name":{"ja":"食道がん","en":"esophageal"}},{"terms":[{"code":"C049","label":{"ja":"口（腔）底，部位不明","en":"Malignant neoplasm: Floor of mouth, unspecified"}}],"name":{"ja":"口腔底がん","en":"oral"}},{"terms":[{"code":"C029","label":{"ja":"舌，部位不明","en":"Malignant neoplasm: Tongue, unspecified"}}],"name":{"ja":"舌がん","en":"tongue"}},{"terms":[{"code":"C109","label":{"ja":"中咽頭，部位不明","en":"Malignant neoplasm: Oropharynx, unspecified"}}],"name":{"ja":"中咽頭がん","en":"middle pharynx"}},{"terms":[{"code":"C031","label":{"ja":"下顎歯肉","en":"Malignant neoplasm: Lower gum"}}],"name":{"ja":"下歯肉がん","en":"gingiva"}},{"terms":[{"code":"C220","label":{"ja":"肝細胞癌","en":"Malignant neoplasm: Liver cell carcinoma"}}],"name":{"ja":"肝がん","en":"liver"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":108,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織および非腫瘍組織から抽出したDNA","en":"DNAs extracted from tumor tissues and non-tumor tissues"}},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"amplicon-seq","label":{"en":"Amplicon-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":"各種パネル情報と対象疾患と対象者数","en":"panel information and number of subjects"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"ion-ampliseq-library-kit-plus","label":{"en":"Ion AmpliSeq Library Kit Plus"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"PCR","en":"PCR"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"thermo-fisher-scientific-ion-s5","label":{"en":"Thermo Fisher Scientific Ion S5"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"single-end","label":{"ja":"シングルエンド","en":"Single-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":200,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":372114350635,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]}